Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G356000.1 | Wheat | nucleus | 84.88 | 83.59 |
| TraesCS3B01G394800.1 | Wheat | nucleus | 83.18 | 83.05 |
| Os01t0846450-01 | Rice | cytosol | 21.3 | 66.99 |
| KXG33685 | Sorghum | nucleus | 48.92 | 52.48 |
| Zm00001d042885_P006 | Maize | nucleus | 44.75 | 49.91 |
| Solyc06g051780.2.1 | Tomato | cytosol | 16.2 | 43.75 |
| GSMUA_Achr6P34020_001 | Banana | cytosol | 27.78 | 42.86 |
| PGSC0003DMT400061199 | Potato | cytosol | 17.44 | 40.36 |
| KRG97851 | Soybean | cytosol | 22.38 | 34.94 |
| VIT_13s0019g02230.t01 | Wine grape | cytosol | 23.61 | 33.77 |
| KRH31028 | Soybean | cytosol | 22.38 | 31.87 |
| AT2G39740.1 | Thale cress | cytosol | 25.0 | 31.7 |
| Bra017054.1-P | Field mustard | cytosol | 24.69 | 31.68 |
| CDY07030 | Canola | cytosol | 24.54 | 31.49 |
| CDX93239 | Canola | cytosol | 24.54 | 31.49 |
| TraesCS7A01G280800.1 | Wheat | cytosol | 13.73 | 15.84 |
| TraesCS4A01G311100.1 | Wheat | nucleus | 13.58 | 15.83 |
| TraesCS6A01G067000.1 | Wheat | cytosol | 10.65 | 11.69 |
| TraesCS1A01G139400.1 | Wheat | nucleus | 10.65 | 8.33 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G362300.1 | EnsemblPlantsGene:TraesCS3A01G362300 | Gene3D:1.10.1410.10 | Gene3D:3.30.460.10 | PANTHER:PTHR12271 | PANTHER:PTHR12271:SF94 |
| SUPFAM:SSF81301 | SUPFAM:SSF81631 | TIGR:cd05402 | MapMan:16.10.2.6.1 | : | : |
Description
No Description!
Coordinates
chr3A:+:610411544..610415564
Molecular Weight (calculated)
72064.4 Da
IEP (calculated)
9.213
GRAVY (calculated)
-0.665
Length
648 amino acids
Sequence
(BLAST)
(BLAST)
001: MIELAPNNDV LEKCIKDILS QIKPADDDLN KRLSAIKELE VSMQPVAALK GAAAKPFGSF LSNLYSKSGD LDISVQLMNS SNLPINKKKK ISILKAVRTA
101: LQRGGVYGYM EFIPQARVPV LQYVSNRFGI SCDLSVDNYP GRIKSKIFYW ISTLDERFGD MVLLIKEWAK AQNINDPKSG TLNSYSLCLL VLFHFQTCEP
201: AILPPLEDIY EGNITEDFAD MTLYNEEHLD EVCAANIAKF QSQNKEQRNE SSLCHLLATF FHKFCHIDSL SSDVISTYTG QFKKIQDIPI LRKKPYSLFV
301: EDPVERPDNA ARAVGERGLL LIASAFSDAK NKLASLEHTD RNDLLAMLST PGVCSKLGGR VIANNYTNTP QRTRQHVINV GAKVSNNQPR LRAKGFTGSR
401: PVKNPTQANT VQNPTQVNTD TAGRQTPGHH RNHDPPQVYA NAAVHQPSRQ PGLYTNHYPS SAYTSGRQTT GSYLSQSHPQ AHTTWGPTGV PYENHNHQPA
501: YTPVYQAAGP YYYPSQQQPH TSGFQTPGSY QNEYQSQSPV HTSGIQRPGP YNYHSQPQGH TTGVHMPGQY QNGCYNQLAY TAGQGSHQNW RGAQYTPGHQ
601: ARYYRNGVTT RYEPVAGGLQ NGPARARDSR SQGSSSRTEW RGSSQHQT
101: LQRGGVYGYM EFIPQARVPV LQYVSNRFGI SCDLSVDNYP GRIKSKIFYW ISTLDERFGD MVLLIKEWAK AQNINDPKSG TLNSYSLCLL VLFHFQTCEP
201: AILPPLEDIY EGNITEDFAD MTLYNEEHLD EVCAANIAKF QSQNKEQRNE SSLCHLLATF FHKFCHIDSL SSDVISTYTG QFKKIQDIPI LRKKPYSLFV
301: EDPVERPDNA ARAVGERGLL LIASAFSDAK NKLASLEHTD RNDLLAMLST PGVCSKLGGR VIANNYTNTP QRTRQHVINV GAKVSNNQPR LRAKGFTGSR
401: PVKNPTQANT VQNPTQVNTD TAGRQTPGHH RNHDPPQVYA NAAVHQPSRQ PGLYTNHYPS SAYTSGRQTT GSYLSQSHPQ AHTTWGPTGV PYENHNHQPA
501: YTPVYQAAGP YYYPSQQQPH TSGFQTPGSY QNEYQSQSPV HTSGIQRPGP YNYHSQPQGH TTGVHMPGQY QNGCYNQLAY TAGQGSHQNW RGAQYTPGHQ
601: ARYYRNGVTT RYEPVAGGLQ NGPARARDSR SQGSSSRTEW RGSSQHQT
001: MSRNPFLDPT LQEILQVIKP TRADRDTRIT VIDQLRDVLQ SVECLRGATV QPFGSFVSNL FTRWGDLDIS VDLFSGSSIL FTGKKQKQTL LGHLLRALRA
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q
101: SGLWYKLQFV IHARVPILKV VSGHQRISCD ISIDNLDGLL KSRFLFWISE IDGRFRDLVL LVKEWAKAHN INDSKTGTFN SYSLSLLVIF HFQTCVPAIL
201: PPLRVIYPKS AVDDLTGVRK TAEESIAQVT AANIARFKSE RAKSVNRSSL SELLVSFFAK FSDINVKAQE FGVCPFTGRW ETISSNTTWL PKTYSLFVED
301: PFEQPVNAAR SVSRRNLDRI AQVFQITSRR LVSECNRNSI IGILTGQHIQ ESLYRTISLP SQHHANGMHN VRNLHGQARP QNQQMQQNWS QSYNTPNPPH
401: WPPLTQSRPQ QNWTQNNPRN LQGQPPVQGQ TWPVITQTQT QQKSPYKSGN RPLKNTSAGS SQNQGHIGKP SGHMNGVNSA RPAYTNGVNS ARPPSKIPSQ
501: GGQIWRPRHE Q
Arabidopsis Description
HESO1Protein HESO1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XET5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.