Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G090200.1 | Wheat | cytosol | 35.93 | 95.93 |
| TraesCSU01G117200.1 | Wheat | cytosol | 92.37 | 92.69 |
| HORVU6Hr1G012060.3 | Barley | cytosol, nucleus | 60.34 | 82.98 |
| Os02t0122100-00 | Rice | cytosol | 46.61 | 74.93 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 36.27 | 62.39 |
| Zm00001d015059_P001 | Maize | nucleus | 51.69 | 50.25 |
| OQU84248 | Sorghum | nucleus | 51.19 | 46.68 |
| VIT_15s0048g01340.t01 | Wine grape | nucleus | 42.03 | 34.3 |
| KRH48314 | Soybean | endoplasmic reticulum | 40.68 | 32.79 |
| CDY27369 | Canola | nucleus | 39.15 | 32.08 |
| KRH65203 | Soybean | nucleus | 39.49 | 31.87 |
| CDY37053 | Canola | nucleus | 38.81 | 31.63 |
| PGSC0003DMT400000387 | Potato | plastid | 37.29 | 31.03 |
| Bra039325.1-P | Field mustard | nucleus | 39.66 | 30.79 |
| Solyc01g094000.2.1 | Tomato | nucleus | 40.34 | 30.71 |
| AT2G45620.1 | Thale cress | nucleus | 39.15 | 30.24 |
| TraesCS1A01G139400.1 | Wheat | nucleus | 39.83 | 28.38 |
| TraesCS4A01G311100.1 | Wheat | nucleus | 13.05 | 13.85 |
| TraesCS7A01G280800.1 | Wheat | cytosol | 12.88 | 13.52 |
| TraesCS3A01G362300.1 | Wheat | nucleus | 11.69 | 10.65 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G067000.1 | EnsemblPlantsGene:TraesCS6A01G067000 | Gene3D:1.10.1410.10 | Gene3D:3.30.460.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016740 | GO:GO:0016779 | InterPro:PAP_assoc | InterPro:Polymerase_NTP_transf_dom | PANTHER:PTHR12271 | PANTHER:PTHR12271:SF53 |
| PFAM:PF01909 | PFAM:PF03828 | SEG:seg | SUPFAM:SSF81301 | SUPFAM:SSF81631 | TIGR:cd05402 |
| MapMan:16.10.2.6.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:35637911..35640690
Molecular Weight (calculated)
64506.1 Da
IEP (calculated)
5.968
GRAVY (calculated)
-0.454
Length
590 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGDAKPLA GGAFLRFLLP APKPEPTPPA RLAPPHCLVA PAQPDPPPGA LPDERLFIVA PTRPAWLPPQ PRPQPQHPFS VPPARRVHPA AGAARNAGRF
101: AAGRGGQARR RAGDFAGSRA RAGPDRRKAG GGLAVKANGG EAGAGDRRAA AAARREKRVW VAVERKGASG GSDADDPAAV GGGYAGGDEA GGSVEGEEQL
201: EPDDGDGRRL GEELEDSLLI AGDQECHDSD GGQQSSENTM SQSNQSRRLQ IRTHTGWMEC RHDIGTFAPG LLSIYESLKP SEDHMSKQSR LIDSLTKSVS
301: KEWPNAQLHL YGSCANSFGT SHSDVDVCLE IDIGTGSEVE LLLRLAEILR GDNFDSVEAI TSARVPIVRM LDAGSGFSCD ICINNLLAVA NTKLLKDYAQ
401: IDGRLLQLAS IVKHWAKLRG VNETYRGTLS SYAYVLMCIS FLQLREPKIL PCLQAMEPTY TMVVDDTECA YFDEVHQLHD FGAENKETVA ELLWAFFHYW
501: AFQHDYRKDV ISIRMGKIIS KKEKNWTTRI GNDRHLICIE DPFETGHDLG RIVDRQTIRI IREEFERAAA MLQHDDDPCS TLFEPYNYEN
101: AAGRGGQARR RAGDFAGSRA RAGPDRRKAG GGLAVKANGG EAGAGDRRAA AAARREKRVW VAVERKGASG GSDADDPAAV GGGYAGGDEA GGSVEGEEQL
201: EPDDGDGRRL GEELEDSLLI AGDQECHDSD GGQQSSENTM SQSNQSRRLQ IRTHTGWMEC RHDIGTFAPG LLSIYESLKP SEDHMSKQSR LIDSLTKSVS
301: KEWPNAQLHL YGSCANSFGT SHSDVDVCLE IDIGTGSEVE LLLRLAEILR GDNFDSVEAI TSARVPIVRM LDAGSGFSCD ICINNLLAVA NTKLLKDYAQ
401: IDGRLLQLAS IVKHWAKLRG VNETYRGTLS SYAYVLMCIS FLQLREPKIL PCLQAMEPTY TMVVDDTECA YFDEVHQLHD FGAENKETVA ELLWAFFHYW
501: AFQHDYRKDV ISIRMGKIIS KKEKNWTTRI GNDRHLICIE DPFETGHDLG RIVDRQTIRI IREEFERAAA MLQHDDDPCS TLFEPYNYEN
001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
Arabidopsis Description
URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.