CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65203	Soybean	nucleus	76.23	76.33
GSMUA_Achr2P01000_001	Banana	cytosol, mitochondrion, nucleus	34.97	74.64
KXG32580	Sorghum	cytosol	23.09	72.53
GSMUA_Achr11P...	Banana	cytosol	34.29	68.21
TraesCS6B01G090200.1	Wheat	cytosol	20.49	67.87
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	30.87	65.89
Os10t0188300-01	Rice	cytosol, nucleus, plastid	33.33	65.59
Os02t0122100-00	Rice	cytosol	29.92	59.67
HORVU6Hr1G012060.3	Barley	cytosol, nucleus	30.46	51.98
VIT_15s0048g01340.t01	Wine grape	nucleus	46.17	46.75
CDY27369	Canola	nucleus	45.22	45.97
CDY37053	Canola	nucleus	44.26	44.75
PGSC0003DMT400000387	Potato	plastid	43.31	44.71
Solyc01g094000.2.1	Tomato	nucleus	46.45	43.87
Bra039325.1-P	Field mustard	nucleus	44.81	43.16
AT2G45620.1	Thale cress	nucleus	44.54	42.67
TraesCS6A01G067000.1	Wheat	cytosol	32.79	40.68
TraesCSU01G117200.1	Wheat	cytosol	32.38	40.31
Zm00001d015059_P001	Maize	nucleus	30.87	37.23
OQU84248	Sorghum	nucleus	32.65	36.94
Zm00001d014321_P007	Maize	plastid	39.34	36.5
TraesCS1D01G133800.1	Wheat	nucleus, plastid	40.3	35.63
TraesCS1A01G139400.1	Wheat	nucleus	40.16	35.51
TraesCS1B01G149800.1	Wheat	nucleus	40.3	34.54
HORVU1Hr1G031950.1	Barley	plastid	39.34	33.37
KXG38754	Sorghum	plastid	28.01	29.12
KRH53978	Soybean	cytosol	10.52	20.48
KRG97851	Soybean	cytosol	9.15	16.14
KRH31028	Soybean	cytosol	9.43	15.16

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100812787	MapMan:16.10.2.6.2	Gene3D:3.30.460.10	EMBL:ACUP02004222	EnsemblPlantsGene:GLYMA_07G082200
GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0016779	UniProt:K7L0E8	EnsemblPlants:KRH48314
ProteinID:KRH48314	ProteinID:KRH48314.1	InterPro:PAP_assoc	PFAM:PF01909	PFAM:PF03828	PANTHER:PTHR12271
PANTHER:PTHR12271:SF53	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0002338DB5	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:7549036..7554463

Molecular Weight (calculated)

81797.2 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.562

Length

732 amino acids

Sequence
(BLAST)

001: MNGGGGDLPP SNGGEFLLSL IQQRPHQPHP HPPPQSPAID PAVAAIGPTI PVAPPLWQIL SADHPHHHHH QPHPHHLPPP WSHSLSSSPL YPPNFFGLPH
101: NAFPPPRTHF PITPNSVANG VNANINLAHD LRNLGFPIEE SHNNNNNNNK VDGFVHHHHQ QQQQQHELKL QFGSLPTVAY SAAEVSSNGG DSLLNLKFNR
201: VDHPTSNSSG NVVVQGNHDA VERERRGLGG YRAGGSLPPE TSRVPPGFGN RTRGKGLEGR NENLYDRREG GRMVSGERSN VRGNVGHKMG LVDQLDRPGP
301: PAGSHLHSGS GNDAGIGEVG GRDGKHKEIG RLRMEGVPES GGGGADVDVL GEQLADSLLV KDESDDRTNL RQRRREKDVR LSDSRGQQIM SQRGRMYRRQ
401: MMCRRDIDVF NVPFLAIYGS LIPPEEEKLK QKKLVALLEK LVSKEWPTAK LYLYGSCANS FGVSKSDIDV CLAIEEADME KSKIIMKLAD ILQSDNLQNV
501: QALTRARVPI VKLMDPVTGI SCDICINNLL AVVNTKLLRD YAHIDPRLRQ LAFIIKHWAK SRRVNETYHG TLSSYAYVLM CIHFLQMRRP AILPCLQEME
601: TTYSVTVDDI HCAYFDQVEK LSDFGRHNKE SIAQLVRGFF HYWAYCHDYA NTVISVRTGS IISKREKDWT RRIGNDRHLI CIEDPFEISH DLGRVVDKHS
701: IKVLREEFER AAEIMQNDPN PCIKLFEPYV PS

Best Arabidopsis Sequence Match ( AT2G45620.1 )
(BLAST)

001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN

Arabidopsis Description

URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.