CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039325.1-P	Field mustard	nucleus	89.09	84.87
CDY27369	Canola	nucleus	82.73	83.19
GSMUA_Achr2P01000_001	Banana	cytosol, mitochondrion, nucleus	33.43	70.55
KXG32580	Sorghum	cytosol	22.24	69.1
TraesCS6B01G090200.1	Wheat	cytosol	20.17	66.06
GSMUA_Achr11P...	Banana	cytosol	32.6	64.13
Os10t0188300-01	Rice	cytosol, nucleus, plastid	32.73	63.71
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	30.11	63.56
Os02t0122100-00	Rice	cytosol	29.83	58.86
AT2G45620.1	Thale cress	nucleus	58.29	55.24
HORVU6Hr1G012060.3	Barley	cytosol, nucleus	29.97	50.58
VIT_15s0048g01340.t01	Wine grape	nucleus	45.99	46.06
KRH48314	Soybean	endoplasmic reticulum	44.75	44.26
KRH65203	Soybean	nucleus	43.92	43.5
PGSC0003DMT400000387	Potato	plastid	41.71	42.6
Solyc01g094000.2.1	Tomato	nucleus	44.89	41.94
TraesCSU01G117200.1	Wheat	cytosol	31.63	38.95
TraesCS6A01G067000.1	Wheat	cytosol	31.63	38.81
Zm00001d015059_P001	Maize	nucleus	30.66	36.57
OQU84248	Sorghum	nucleus	31.49	35.24
Zm00001d014321_P007	Maize	plastid	36.88	33.84
TraesCS1A01G139400.1	Wheat	nucleus	37.98	33.21
TraesCS1D01G133800.1	Wheat	nucleus, plastid	37.98	33.21
TraesCS1B01G149800.1	Wheat	nucleus	37.85	32.08
HORVU1Hr1G031950.1	Barley	plastid	37.71	31.63
KXG38754	Sorghum	plastid	27.07	27.84
CDX99148	Canola	cytosol	11.88	18.9
CDX86037	Canola	cytosol	11.74	18.2
CDY07030	Canola	cytosol	10.22	14.65
CDX93239	Canola	cytosol	10.22	14.65

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.10.2.6.2	Gene3D:3.30.460.10	GO:A0A078HJP0	UniProt:A0A078HJP0	EnsemblPlants:CDY37053
ProteinID:CDY37053	ProteinID:CDY37053.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016779	EnsemblPlantsGene:GSBRNA2T00063262001	InterPro:PAP_assoc	PFAM:PF01909	PFAM:PF03828	PANTHER:PTHR12271
PANTHER:PTHR12271:SF53	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0004EE0E25	SEG:seg

Description

BnaA04g26310DBnaA04g26310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJP0]

Coordinates

chrLK032390:+:223862..226792

Molecular Weight (calculated)

80397.2 Da

IEP (calculated)

6.475

GRAVY (calculated)

-0.654

Length

724 amino acids

Sequence
(BLAST)

001: MAEGGGGDSP APPSGNNGGG EFLLSLLHRR PHQQSPPIRP PAPPPPSQSF TLDPAIAAVG PTLNSNWASN GTPPWPHASS PPNLLGFPQF QENPFPSNQF
101: DGNQRLSGED AYRLGFNGAG IHHSMVQQQP QRLVFGSFSG DATQSGFLNG SLNSSKDPNF SHPGSIGRGN WGPIGNNGRG AKSTPPPPGF SSNQRAWDRD
201: LLTRDADRGM LMGMMGSSQR SHDNAKGEHH NAWDKSAVDL SAENDRLRRL SIQDEGRFNL TQQVDHPGPP MGKSLHSVSA ADAQDSFSML NKEARGGGQY
301: REELGQLSKG KREGNVEFGA AEGETEGFGE DIVESVLLED ETDDKDAKDE KKTSRTSREK ESRMDTRGQW LLGQRLRMVK RYMACRNDIH RHDAPFIAVY
401: KSLIPAEEEL EKQKQLMAKL DNLVAKEWPN AKLYLYGSCA NSFGFPKSDI DVCLAIDDDD VNKSEILLKL ADSLESDHFQ NVQALTRARV PIVKLMDPVT
501: GISCDICINN VLAVVNTKLL RDYSMIDGRL RQLAFIVKHW AKSRKVNETY QGTLSSYAYV LMCIHYLQQR SPPILPCLQE MEPTYSVQVD NIRCAYFDNV
601: GRLSTFGSSN RETIAELVWG FFNYWAYGHD YANTVVSVRT GSILGKREKD WTRRVGNDRH LICIEDPFET SHDLGRVVDK FSIRVLREEF ERAAKIMHQD
701: PNPCAKLFEP YVPGDDNGNG QGHN

Best Arabidopsis Sequence Match ( AT2G45620.1 )
(BLAST)

001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN

Arabidopsis Description

URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.