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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G090200.1 Wheat cytosol 27.36 80.09
Os02t0122100-00 Rice cytosol 41.27 72.75
KXG32580 Sorghum cytosol 22.72 63.09
Zm00001d015059_P001 Maize nucleus 58.73 62.6
GSMUA_AchrUn_... Banana cytosol, mitochondrion, nucleus 33.08 62.39
HORVU6Hr1G012060.3 Barley cytosol, nucleus 41.27 62.24
TraesCSU01G117200.1 Wheat cytosol 48.22 53.06
TraesCS6A01G067000.1 Wheat cytosol 46.68 51.19
VIT_15s0048g01340.t01 Wine grape nucleus 38.02 34.02
KRH65203 Soybean nucleus 38.02 33.65
PGSC0003DMT400000387 Potato plastid 36.32 33.15
KRH48314 Soybean endoplasmic reticulum 36.94 32.65
CDY27369 Canola nucleus 35.24 31.67
CDY37053 Canola nucleus 35.24 31.49
Solyc01g094000.2.1 Tomato nucleus 37.25 31.1
AT2G45620.1 Thale cress nucleus 35.39 29.97
Bra039325.1-P Field mustard nucleus 34.62 29.47
KXG38754 Sorghum plastid 25.04 23.01
OQU89042 Sorghum cytosol 11.9 15.46
OQU87849 Sorghum cytosol 10.97 14.0
KXG33685 Sorghum nucleus 10.36 11.09
OQU80706 Sorghum nucleus 11.59 10.87
Protein Annotations
Gene3D:1.10.1410.10MapMan:16.10.2.6.2Gene3D:3.30.460.10EntrezGene:8068263UniProt:A0A1Z5RKJ6GO:GO:0003674
GO:GO:0003824GO:GO:0016740GO:GO:0016779EnsemblPlants:OQU84248ProteinID:OQU84248ProteinID:OQU84248.1
InterPro:PAP_assocPFAM:PF01909PFAM:PF03828PANTHER:PTHR12271PANTHER:PTHR12271:SF53InterPro:Polymerase_NTP_transf_dom
EnsemblPlantsGene:SORBI_3004G019700SUPFAM:SSF81301SUPFAM:SSF81631UniParc:UPI0001A8528DRefSeq:XP_002451420.1SEG:seg
Description
hypothetical protein
Coordinates
chr4:+:1567080..1570659
Molecular Weight (calculated)
71784.6 Da
IEP (calculated)
6.554
GRAVY (calculated)
-0.628
Length
647 amino acids
Sequence
(BLAST)
001: MAGGDDAQDH AATEDPPQRA PDPFLRFLIP APKPRRAAPT ALLQPPHRLI APPELVMRPE ERLFIVPPTR PDWLPPPPRS YQHSPSSSSS TGAVARPRPP
101: VPPPPPPPSP SRRYHSSSPS PRPRPRPPFP PPTNDPWARN AGRFARQFAG VHVNGNARRG RSPVVPLPHD GGARFLPVPL PHDVGFQRPK AAAAAPHKEK
201: EKKAWVAVQR KAESGARDED RAAALSEGYS GGDEGSVEAE DVLQPQGKGE QQEDDDANRR LLLIDQQDDD VESSLPTDGT LDCSGRAGGG DRPSEVTPGP
301: DQVPRLQGRM RRPEAECRHD IDTFTPGLLA LYESLKPSEE HRSKQKQLVD SLAKSVSKEW PNAQMHLYGS CANSFGTSHS DVDVCLEMET GTQDAIEVLV
401: KLADVLRTDG FENVEAITSA RVPIVRMSDP GSGFSCDICI NNLLAVANTK LLKDYAQIDQ RLLQLAFLVK HWAKQRGVNE TYRGTLSSYA YVLMCINFLQ
501: QCEPKILPCL QAMEPTYKLT VDGTECAYFD KVDQLQGFGA DNKASVAELL WGFFHYWASQ HHYKRDVISV RLGKTISKQE KRWTTRVGND RHLVCIEDPF
601: EVSHDLGRVV DRQTIRILRE EMERAAVVLQ HDDDPCVTLF EPYGCEN
Best Arabidopsis Sequence Match ( AT2G45620.1 )
(BLAST)
001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
Arabidopsis Description
URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.