Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G090200.1 | Wheat | cytosol | 49.88 | 96.83 |
| Os02t0122100-00 | Rice | cytosol | 64.57 | 75.48 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 49.65 | 62.1 |
| TraesCSU01G117200.1 | Wheat | cytosol | 82.98 | 60.54 |
| TraesCS6A01G067000.1 | Wheat | cytosol | 82.98 | 60.34 |
| Zm00001d015059_P001 | Maize | nucleus | 60.84 | 43.0 |
| OQU84248 | Sorghum | nucleus | 62.24 | 41.27 |
| VIT_15s0048g01340.t01 | Wine grape | nucleus | 54.78 | 32.5 |
| KRH65203 | Soybean | nucleus | 53.61 | 31.46 |
| CDY27369 | Canola | nucleus | 51.52 | 30.69 |
| KRH48314 | Soybean | endoplasmic reticulum | 51.98 | 30.46 |
| PGSC0003DMT400000387 | Potato | plastid | 49.65 | 30.04 |
| CDY37053 | Canola | nucleus | 50.58 | 29.97 |
| Bra039325.1-P | Field mustard | nucleus | 51.05 | 28.82 |
| AT2G45620.1 | Thale cress | nucleus | 50.12 | 28.14 |
| Solyc01g094000.2.1 | Tomato | nucleus | 50.58 | 28.0 |
| HORVU1Hr1G031950.1 | Barley | plastid | 51.28 | 25.49 |
| HORVU4Hr1G000070.38 | Barley | cytosol | 17.48 | 12.95 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G012060.3 | EnsemblPlantsGene:HORVU6Hr1G012060 | Gene3D:1.10.1410.10 | Gene3D:3.30.460.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016740 | GO:GO:0016779 | InterPro:PAP_assoc | InterPro:Polymerase_NTP_transf_dom | PANTHER:PTHR12271 | PANTHER:PTHR12271:SF53 |
| PFAM:PF01909 | PFAM:PF03828 | SEG:seg | SUPFAM:SSF81301 | SUPFAM:SSF81631 | UniParc:UPI000B4770F0 |
| UniProt:A0A287TBP4 | MapMan:16.10.2.6.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:22821515..22827285
Molecular Weight (calculated)
47807.8 Da
IEP (calculated)
4.359
GRAVY (calculated)
-0.422
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: KGGGGGSDAD DQAAVGGGYA GGDEAGGSIE GEEQLEPDDG EQDGDARRLG EELEDSLLIA GDQECHDSDG DQHSSENAMS QSNQSRRLQI RTRTGWMECR
101: HDIGTFASGL LSVYESLKPS EEHMSKQSQL IDSITKSVSK EWPNAQLHLY GSCANSFGTS HSDVDVCLEI DIGTGSEVEL LLRLAEILRG DNFDSVEAIT
201: SARVPIVRML DAGSGFSCDI CINNLFAVAN TKLLKDYAQI DGRLLQLASI VKHWAKLRGV NETYRGTLSS YAYVLMCISF LQLREPKILP CLQAMEPTYT
301: MVVDDTECAY FDEVDQLRDF GAENKETIAE LLWAFFHYWA FQHDYRKDVI SICMGKIISK KEKNWTTRIG NDRHLICIED PFETGHDLGR VVDRQTIRIV
401: REEFERAAAV LQHDDDPCAT LFEPYNYEN
101: HDIGTFASGL LSVYESLKPS EEHMSKQSQL IDSITKSVSK EWPNAQLHLY GSCANSFGTS HSDVDVCLEI DIGTGSEVEL LLRLAEILRG DNFDSVEAIT
201: SARVPIVRML DAGSGFSCDI CINNLFAVAN TKLLKDYAQI DGRLLQLASI VKHWAKLRGV NETYRGTLSS YAYVLMCISF LQLREPKILP CLQAMEPTYT
301: MVVDDTECAY FDEVDQLRDF GAENKETIAE LLWAFFHYWA FQHDYRKDVI SICMGKIISK KEKNWTTRIG NDRHLICIED PFETGHDLGR VVDRQTIRIV
401: REEFERAAAV LQHDDDPCAT LFEPYNYEN
001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
Arabidopsis Description
URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.