Factsheet for PGSC0003DMT400000387

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094000.2.1	Tomato	nucleus	83.78	76.65
GSMUA_Achr2P01000_001	Banana	cytosol, mitochondrion, nucleus	35.4	73.18
KXG32580	Sorghum	cytosol	23.41	71.24
GSMUA_Achr11P...	Banana	cytosol	34.84	67.12
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	32.02	66.18
TraesCS6B01G090200.1	Wheat	cytosol	20.59	66.06
Os10t0188300-01	Rice	cytosol, nucleus, plastid	33.99	64.78
Os02t0122100-00	Rice	cytosol	30.89	59.67
HORVU6Hr1G012060.3	Barley	cytosol, nucleus	30.04	49.65
VIT_15s0048g01340.t01	Wine grape	nucleus	44.43	43.57
KRH48314	Soybean	endoplasmic reticulum	44.71	43.31
CDY27369	Canola	nucleus	43.3	42.64
KRH65203	Soybean	nucleus	43.3	42.0
CDY37053	Canola	nucleus	42.6	41.71
AT2G45620.1	Thale cress	nucleus	44.01	40.84
Bra039325.1-P	Field mustard	nucleus	42.88	40.0
TraesCSU01G117200.1	Wheat	cytosol	31.31	37.76
TraesCS6A01G067000.1	Wheat	cytosol	31.03	37.29
OQU84248	Sorghum	nucleus	33.15	36.32
Zm00001d015059_P001	Maize	nucleus	30.61	35.75
TraesCS1D01G133800.1	Wheat	nucleus, plastid	37.38	32.0
TraesCS1A01G139400.1	Wheat	nucleus	37.24	31.88
Zm00001d014321_P007	Maize	plastid	35.4	31.81
TraesCS1B01G149800.1	Wheat	nucleus	37.38	31.03
HORVU1Hr1G031950.1	Barley	plastid	36.67	30.13
KXG38754	Sorghum	plastid	25.53	25.71
PGSC0003DMT400061199	Potato	cytosol	8.32	21.07
PGSC0003DMT400076240	Potato	nucleus	10.58	12.2
PGSC0003DMT400059048	Potato	plastid	5.5	10.48

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.10.2.6.2	Gene3D:3.30.460.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019538
GO:GO:0040029	GO:GO:0050265	GO:GO:0060964	GO:GO:0071076	GO:GO:1903705	UniProt:M0ZGN8
InterPro:PAP_assoc	PFAM:PF01909	PFAM:PF03828	EnsemblPlantsGene:PGSC0003DMG400000138	PGSC:PGSC0003DMG400000138	EnsemblPlants:PGSC0003DMT400000387
PANTHER:PTHR12271	PANTHER:PTHR12271:SF53	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000296A5D9
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000138]

Coordinates

chr1:-:71505971..71515942

Molecular Weight (calculated)

79322.5 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.533

Length

709 amino acids

Sequence
(BLAST)

001: MPYPPLFHTP TNPSVLPYSH SPPLFVPHNF FVRGFLQNPN SSHTINPNFS SPPAPTGFSQ FQHASPLGFG SVGENMGNLG IFGANAKASN SNNEFDHNLI
101: FGSLRRDIQG NVSMLNDRFS DDLACKVGNF EQKNQESRLT NVRMLNGVEG KRENVIGSGR KQLGNLRGLE QQNRGGGGGE SESGGLGRGR QFHSGTVRGA
201: VPPPGFSSKP RSRDFEHNVD NEKNNFVELN HRGIGLNHKY ERESKHLTRN GKNYAIGSDD QRVFRQLDSP VPPAGSKLHS VLGSDVEDST LELHGEDAES
301: GEETVSGMRN VLGRSSAQGQ SDLDELGEHV ISSLGLEDEP DERSDKKKHH ASRDKDYRSD KRGAYILGQR MRMLKRQIAC RSDINRMNGA FLATFESLIP
401: PEEERTKQKQ LLALLDEIVS KEWPDARLYV YGSCANSFGF SKSDIDICLA IEDANIDKSE VLLKLADMLQ SGNLQNVQAL TRARVPIVKL MDPETGISCD
501: ICVNNVLAVV NTKLLRDYAQ IDVRLRQLAF IVKHWAKSRG VNQTYQGTLS SYAYVLMCIH FLQQRRPAIL PCLQGMEATY SVTVGNIECA YFDKVEKLYG
601: FGSHNGESLA RLVWAFFSYW AYYHDYANDV ISVRSGSTVS KRAKDWTRRI GNDRHLICIE DPFEVSHDLG RVVDKFSIRV LREEFERAAE IIQYDPNPCV
701: KLFEPYIPS

Best Arabidopsis Sequence Match ( AT2G45620.1 )
(BLAST)

001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN

Arabidopsis Description

URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.