Factsheet for GSMUA_Achr2P01000_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	87.76	81.79
KXG32580	Sorghum	cytosol	51.6	75.97
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	68.51	68.51
Os10t0188300-01	Rice	cytosol, nucleus, plastid	70.85	65.32
VIT_15s0048g01340.t01	Wine grape	nucleus	74.64	35.41
PGSC0003DMT400000387	Potato	plastid	73.18	35.4
KRH48314	Soybean	endoplasmic reticulum	74.64	34.97
KRH65203	Soybean	nucleus	73.76	34.61
CDY27369	Canola	nucleus	70.55	33.61
CDY37053	Canola	nucleus	70.55	33.43
Solyc01g094000.2.1	Tomato	nucleus	74.05	32.77
Bra039325.1-P	Field mustard	nucleus	70.55	31.84
Zm00001d014321_P007	Maize	plastid	72.89	31.69
AT2G45620.1	Thale cress	nucleus	70.55	31.68
TraesCS1D01G133800.1	Wheat	nucleus, plastid	74.64	30.92
TraesCS1A01G139400.1	Wheat	nucleus	74.34	30.8
TraesCS1B01G149800.1	Wheat	nucleus	74.34	29.86
HORVU1Hr1G031950.1	Barley	plastid	74.05	29.43
KXG38754	Sorghum	plastid	49.27	24.01
GSMUA_Achr6P34020_001	Banana	cytosol	20.41	16.67

Protein Annotations

EnsemblPlants:GSMUA_Achr2P01000_001	EnsemblPlants:GSMUA_Achr2T01000_001	EnsemblPlantsGene:GSMUA_Achr2G01000_001	Gene3D:1.10.1410.10	Gene3D:3.30.460.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016740	GO:GO:0016779	InterPro:PAP_assoc	InterPro:Polymerase_NTP_transf_dom	PANTHER:PTHR12271
PANTHER:PTHR12271:SF53	PFAM:PF01909	PFAM:PF03828	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI00029630FB
UniProt:M0S441	MapMan:16.10.2.6.2	:	:	:	:

Description

Putative Poly(A) RNA polymerase cid11 [Source:GMGC_GENE;Acc:GSMUA_Achr2G01000_001]

Coordinates

chr2:-:5744776..5749838

Molecular Weight (calculated)

39487.6 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.211

Length

343 amino acids

Sequence
(BLAST)

001: MRIQRRAIQC RHDIEALNSS FITIFKSLVP AEEEKAKQKE LILSLQNLVT KEWPNAKLHL YGSCANSFGV SKSDIDVCLA IDDHDLSKSD ILLKLADILQ
101: SGNLQNVQAL TRARVPIVKL MDPDTGLSCD ICVNNLLAVV NTKLLKDYAQ IDERLRQLAF IVKHWARSRR VNETYQGTLS SYAYVLMCIH FLQLRRPAIL
201: PCLQAMDATY TVTVENTKCT YFDRVEKLHA FGARNKESIA RLLWGFFHYW AYHHDYTDDV ISIRTGTIIS KRAKDWTRRI GNDRHLICIE DPFDISHDLG
301: RVVDKYSIKI LREEFERAAD ILQYDLNPSV TLFQPYVPGS PQR

Best Arabidopsis Sequence Match ( AT2G45620.1 )
(BLAST)

001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN

Arabidopsis Description

URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.