CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37053	Canola	nucleus	83.19	82.73
Bra039325.1-P	Field mustard	nucleus	84.86	80.39
GSMUA_Achr2P01000_001	Banana	cytosol, mitochondrion, nucleus	33.61	70.55
KXG32580	Sorghum	cytosol	22.36	69.1
TraesCS6B01G090200.1	Wheat	cytosol	20.14	65.61
GSMUA_Achr11P...	Banana	cytosol	32.92	64.4
Os10t0188300-01	Rice	cytosol, nucleus, plastid	33.19	64.25
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	30.28	63.56
Os02t0122100-00	Rice	cytosol	30.0	58.86
AT2G45620.1	Thale cress	nucleus	57.78	54.45
HORVU6Hr1G012060.3	Barley	cytosol, nucleus	30.69	51.52
VIT_15s0048g01340.t01	Wine grape	nucleus	48.47	48.27
KRH48314	Soybean	endoplasmic reticulum	45.97	45.22
KRH65203	Soybean	nucleus	44.58	43.91
Solyc01g094000.2.1	Tomato	nucleus	46.94	43.61
PGSC0003DMT400000387	Potato	plastid	42.64	43.3
TraesCSU01G117200.1	Wheat	cytosol	32.36	39.63
TraesCS6A01G067000.1	Wheat	cytosol	32.08	39.15
Zm00001d015059_P001	Maize	nucleus	30.42	36.08
OQU84248	Sorghum	nucleus	31.67	35.24
Zm00001d014321_P007	Maize	plastid	37.36	34.09
TraesCS1D01G133800.1	Wheat	nucleus, plastid	38.06	33.09
TraesCS1A01G139400.1	Wheat	nucleus	37.78	32.85
TraesCS1B01G149800.1	Wheat	nucleus	37.78	31.85
HORVU1Hr1G031950.1	Barley	plastid	37.5	31.29
KXG38754	Sorghum	plastid	26.53	27.13
CDX99148	Canola	cytosol	11.67	18.46
CDX86037	Canola	cytosol	11.53	17.77
CDX93239	Canola	cytosol	10.14	14.46
CDY07030	Canola	cytosol	10.0	14.26

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.10.2.6.2	Gene3D:3.30.460.10	GO:A0A078GQ90	UniProt:A0A078GQ90	EnsemblPlants:CDY27369
ProteinID:CDY27369	ProteinID:CDY27369.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016779	EnsemblPlantsGene:GSBRNA2T00037310001	InterPro:PAP_assoc	PFAM:PF01909	PFAM:PF03828	PANTHER:PTHR12271
PANTHER:PTHR12271:SF53	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0004EF1564	SEG:seg

Description

BnaC04g50360DBnaC04g50360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ90]

Coordinates

chrLK032203:-:299608..302396

Molecular Weight (calculated)

80001.6 Da

IEP (calculated)

6.388

GRAVY (calculated)

-0.675

Length

720 amino acids

Sequence
(BLAST)

001: MAEGGGGGDS PAPPSENNGG GEFLLSLLHR RPHQQSSTNT NPPAPPPPQS FTLDPAIAAV GPTVNSNWAS NVTPPWPHAS SPPNLLGFPQ FQQNPFPSNQ
101: FDGNQRLSGE DAYRLGFNGA VNHHSVVQQQ PQRLVFGSFS GDATQSGFLN SSKDPNFSHP ASIGRGNWGP IGNNDGRGSS KSTPPPPGFS SNQRAWDRDL
201: LSRDADRGML MGMMGGSQRN HDNAKGEHPK VWDDDLSAEN DRLRRLSIQN EGRFNLTQQV DHPGPPMGKS LHSVSAADAQ DSFSMLSKEA RGGGQYRGEM
301: GQLSKGKREG NGEFGPAEGE TEGFGEDIVE SVLLEDETDD KDAKDEKKTN RTSREKESRM DTRGQWLLGQ RLRMVKRYMA CRNDIHRHDA PFTAVFKSLI
401: PAEEELEKQK QLMAKLDSLV SKEWPNAKLY LYGSCANSFG FPKSDIDVCL AIDDGDVNKS EILLKLADSL ESDNFQNVQA LTRARVPIVK LMDPVTGISC
501: DICINNVLAV VNTKLLRDYS MIDIRLRQLA FIVKHWAKSR KVNETYQGTL SSYAYVLMCI HYLQQRSPPI LPCLQEMEPT YSVRVDNIQC AYFDNVGRLS
601: TFGSSNRETI AELVWGFFNY WAYGHDYANT VVSVRTGSIL GKREKDWTRR VGNDRHLICI EDPFETSHDL GRVVDKFSIR VLREEFERAA KIMHQDPNPC
701: AKLFEPYVPG DDNSNGQGHN

Best Arabidopsis Sequence Match ( AT2G45620.1 )
(BLAST)

001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN

Arabidopsis Description

URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.