Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0122100-00 | Rice | cytosol | 85.52 | 51.5 |
| HORVU6Hr1G012060.3 | Barley | cytosol, nucleus | 96.83 | 49.88 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 66.97 | 43.15 |
| TraesCSU01G117200.1 | Wheat | cytosol | 96.38 | 36.22 |
| TraesCS6A01G067000.1 | Wheat | cytosol | 95.93 | 35.93 |
| Zm00001d015059_P001 | Maize | nucleus | 79.19 | 28.83 |
| OQU84248 | Sorghum | nucleus | 80.09 | 27.36 |
| VIT_15s0048g01340.t01 | Wine grape | nucleus | 69.23 | 21.16 |
| KRH65203 | Soybean | nucleus | 68.33 | 20.66 |
| PGSC0003DMT400000387 | Potato | plastid | 66.06 | 20.59 |
| KRH48314 | Soybean | endoplasmic reticulum | 67.87 | 20.49 |
| CDY37053 | Canola | nucleus | 66.06 | 20.17 |
| CDY27369 | Canola | nucleus | 65.61 | 20.14 |
| AT2G45620.1 | Thale cress | nucleus | 66.52 | 19.24 |
| Bra039325.1-P | Field mustard | nucleus | 66.06 | 19.21 |
| Solyc01g094000.2.1 | Tomato | nucleus | 66.97 | 19.1 |
| TraesCS1B01G149800.1 | Wheat | nucleus | 67.42 | 17.45 |
| TraesCS3B01G394900.1 | Wheat | cytosol | 23.53 | 10.72 |
| TraesCS7B01G180400.1 | Wheat | cytosol | 24.43 | 9.59 |
| TraesCS4B01G003200.1 | Wheat | nucleus | 22.62 | 8.82 |
| TraesCS3B01G394800.1 | Wheat | nucleus | 22.17 | 7.55 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G090200.1 | EnsemblPlantsGene:TraesCS6B01G090200 | Gene3D:1.10.1410.10 | InterPro:PAP_assoc | PANTHER:PTHR12271 | PANTHER:PTHR12271:SF53 |
| PFAM:PF03828 | SUPFAM:SSF81631 | MapMan:16.10.2.6.2 | : | : | : |
Description
No Description!
Coordinates
chr6B:-:65732592..65733981
Molecular Weight (calculated)
25813.0 Da
IEP (calculated)
5.848
GRAVY (calculated)
-0.248
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDAGSGFSC DICINNLFAV ANTKLLKDYA QIDGRLLQLA SIVKHWAKLR GVNETYRGTL SSYAYVLMCI SFLQLREPKI LPCLQAMEPT YTMVVDDTEC
101: AYFDEVHQLR DFGAENKETI AELLWAFFHY WAFQHDYRKD VISIRMGKII SKKEKNWMTR IGNDRHLICI EDPFETGHDL GRVVDRQTIR IIREEFERAA
201: AVLQHDDDPC MTLFEPYHYE K
101: AYFDEVHQLR DFGAENKETI AELLWAFFHY WAFQHDYRKD VISIRMGKII SKKEKNWMTR IGNDRHLICI EDPFETGHDL GRVVDRQTIR IIREEFERAA
201: AVLQHDDDPC MTLFEPYHYE K
001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
Arabidopsis Description
URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.