Factsheet for VIT_15s0048g01340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01000_001	Banana	cytosol, mitochondrion, nucleus	35.41	74.64
GSMUA_Achr11P...	Banana	cytosol	36.51	71.74
KXG32580	Sorghum	cytosol	22.96	71.24
TraesCS6B01G090200.1	Wheat	cytosol	21.16	69.23
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	32.64	68.8
Os10t0188300-01	Rice	cytosol, nucleus, plastid	32.92	63.98
Os02t0122100-00	Rice	cytosol	31.81	62.67
HORVU6Hr1G012060.3	Barley	cytosol, nucleus	32.5	54.78
CDY27369	Canola	nucleus	48.27	48.47
KRH65203	Soybean	nucleus	46.89	46.37
KRH48314	Soybean	endoplasmic reticulum	46.75	46.17
CDY37053	Canola	nucleus	46.06	45.99
Bra039325.1-P	Field mustard	nucleus	47.3	45.0
Solyc01g094000.2.1	Tomato	nucleus	47.72	44.52
PGSC0003DMT400000387	Potato	plastid	43.57	44.43
TraesCSU01G117200.1	Wheat	cytosol	34.99	43.03
TraesCS6A01G067000.1	Wheat	cytosol	34.3	42.03
AT2G45620.1	Thale cress	nucleus	44.26	41.88
OQU84248	Sorghum	nucleus	34.02	38.02
Zm00001d015059_P001	Maize	nucleus	31.54	37.56
Zm00001d014321_P007	Maize	plastid	39.42	36.12
TraesCS1D01G133800.1	Wheat	nucleus, plastid	38.87	33.94
TraesCS1A01G139400.1	Wheat	nucleus	38.73	33.82
TraesCS1B01G149800.1	Wheat	nucleus	38.59	32.67
HORVU1Hr1G031950.1	Barley	plastid	38.87	32.56
KXG38754	Sorghum	plastid	28.77	29.55
VIT_13s0019g02230.t01	Wine grape	cytosol	10.1	16.11
VIT_07s0031g02870.t01	Wine grape	cytosol	9.96	12.97

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.10.2.6.2	Gene3D:3.30.460.10	EMBL:AM475438	ProteinID:CAN77386	ProteinID:CAN77386.1
ProteinID:CCB61366	ProteinID:CCB61366.1	UniProt:F6I349	EMBL:FN596739	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0019538	GO:GO:0040029	GO:GO:0050265	GO:GO:0060964	GO:GO:0071076	GO:GO:1903705
InterPro:PAP_assoc	PFAM:PF01909	PFAM:PF03828	PANTHER:PTHR12271	PANTHER:PTHR12271:SF53	InterPro:Polymerase_NTP_transf_dom
SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0002109EF6	ArrayExpress:VIT_15s0048g01340	EnsemblPlantsGene:VIT_15s0048g01340	EnsemblPlants:VIT_15s0048g01340.t01
unigene:Vvi.5286	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:-:15466657..15476736

Molecular Weight (calculated)

81125.2 Da

IEP (calculated)

7.109

GRAVY (calculated)

-0.531

Length

723 amino acids

Sequence
(BLAST)

001: MHGGGGGAPA PPPSNGGEYL LQLLQNPHHP QASAAAAAAR TPQATTRVPV PSSPLQSLSL DPAVAAVGPA VPFPTLPSNG YDLPHPWANP PNYLIQGLAQ
101: NPWPPQTPQF IGDRELLGED GRRLGFDVRG KTVQHQQHHK LMFGSFPCEI QNHGGLVNGK SLENPIPGAI REPLVGKFDA LKNHKMGLDP IWNLNSHHNA
201: SQQEQERRTV GWGTHQQGEF SRSGPPPGFP SKARAVGNCD SGILRRGLED KVNKGNVTAN DYDEKVRRLS PRHVDNHGNA SAQLGLTGQL EHPGPLLASD
301: IEECLLNLGA EIDGVGDRVR HQKQGMRREG QGNLDDLSEE MTGSLVLEDG SQDKNDTNQH HNSRNRDFRS DTRGQRMLSQ RVRNLKRHME CRRDIGTLNF
401: RFLSIYESLI PEEEEKAKQK QLLTLLEKLV SKEWPKAQLF LYGSCANSFG VSKSDIDVCL AIDDADINKS EFLLKLADIL QSDNLQNVQA LTRARVPIVK
501: LKDPVTGISC DICINNVLAV VNTKLLRDYA QIDVRLRQLA FIVKHWAKSR GVNETYQGTL SSYAYVLMCI HFLQQCKPAI LPCLQGMQTT YSVTVDDIQC
601: AFFDQVERLR HFGSHNKESI AQLVWAFFNY WAYHHDYAND VISIRTGSII SKREKDWTRR KGNDRHLICI EDPFEISHDL GRVVDKFSIK VLREEFERAA
701: YIMQYDPDPC VTLFEPYEEH WFM

Best Arabidopsis Sequence Match ( AT2G45620.1 )
(BLAST)

001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN

Arabidopsis Description

URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.