Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P01000_001 | Banana | cytosol, mitochondrion, nucleus | 81.79 | 87.76 |
| KXG32580 | Sorghum | cytosol | 46.2 | 72.96 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 63.04 | 67.64 |
| Os10t0188300-01 | Rice | cytosol, nucleus, plastid | 64.67 | 63.98 |
| VIT_15s0048g01340.t01 | Wine grape | nucleus | 71.74 | 36.51 |
| PGSC0003DMT400000387 | Potato | plastid | 67.12 | 34.84 |
| KRH48314 | Soybean | endoplasmic reticulum | 68.21 | 34.29 |
| KRH65203 | Soybean | nucleus | 67.66 | 34.06 |
| CDY27369 | Canola | nucleus | 64.4 | 32.92 |
| CDY37053 | Canola | nucleus | 64.13 | 32.6 |
| Solyc01g094000.2.1 | Tomato | nucleus | 67.66 | 32.13 |
| Zm00001d014321_P007 | Maize | plastid | 68.75 | 32.07 |
| TraesCS1A01G139400.1 | Wheat | nucleus | 70.11 | 31.16 |
| TraesCS1D01G133800.1 | Wheat | nucleus, plastid | 70.11 | 31.16 |
| Bra039325.1-P | Field mustard | nucleus | 64.13 | 31.05 |
| AT2G45620.1 | Thale cress | nucleus | 64.13 | 30.89 |
| TraesCS1B01G149800.1 | Wheat | nucleus | 69.84 | 30.09 |
| HORVU1Hr1G031950.1 | Barley | plastid | 69.84 | 29.78 |
| KXG38754 | Sorghum | plastid | 48.37 | 25.28 |
| GSMUA_Achr6P34020_001 | Banana | cytosol | 19.29 | 16.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P16500_001 | EnsemblPlants:GSMUA_Achr11T16500_001 | EnsemblPlantsGene:GSMUA_Achr11G16500_001 | Gene3D:1.10.1410.10 | Gene3D:3.30.460.10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016740 | GO:GO:0016779 | InterPro:PAP_assoc | InterPro:Polymerase_NTP_transf_dom | PANTHER:PTHR12271 |
| PANTHER:PTHR12271:SF53 | PFAM:PF01909 | PFAM:PF03828 | SEG:seg | SUPFAM:SSF81301 | SUPFAM:SSF81631 |
| UniParc:UPI0002968C3C | UniProt:M0RST0 | MapMan:16.10.2.6.2 | : | : | : |
Description
Putative Poly(A) RNA polymerase cid11 [Source:GMGC_GENE;Acc:GSMUA_Achr11G16500_001]
Coordinates
chr11:+:18206452..18212394
Molecular Weight (calculated)
42478.2 Da
IEP (calculated)
8.350
GRAVY (calculated)
-0.172
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFCNFFVQD SRSDHFRGHH VSTQRMRIQR RAIRCRHDME ALNSSFLSIF ESLVPAEEEK AKQMQFLISL QNLVNKEWPN AKLHLYGSCA NTFGVLKSDI
101: DVCLAIDDHD LSKSDILLKL ADLLRSGNLQ NVQALTHARV PILKLIDPVT GLSCDICVNN LLAVVNTKLL KDYAQIDKRL QQLAFLVKHW ARSRRVNETY
201: QGTLSSYAYV LMCIHFLQLR KPAILPCLQA MDTTYTVTID NTKCTYFDQV ERLRAFGVRN KESIARLLWA FFHYWAYHHD YTNDVISIRT GSIISKQAKD
301: WTRRIGNDRH LICIEDPFDI SHDLGRVVDK FSIKILREEF ERAADILQYD TNPCVTLFQP YAAVSPSS
101: DVCLAIDDHD LSKSDILLKL ADLLRSGNLQ NVQALTHARV PILKLIDPVT GLSCDICVNN LLAVVNTKLL KDYAQIDKRL QQLAFLVKHW ARSRRVNETY
201: QGTLSSYAYV LMCIHFLQLR KPAILPCLQA MDTTYTVTID NTKCTYFDQV ERLRAFGVRN KESIARLLWA FFHYWAYHHD YTNDVISIRT GSIISKQAKD
301: WTRRIGNDRH LICIEDPFDI SHDLGRVVDK FSIKILREEF ERAADILQYD TNPCVTLFQP YAAVSPSS
001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN
Arabidopsis Description
URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.