Factsheet for TraesCS1D01G133800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G139400.1	Wheat	nucleus	98.19	98.19
TraesCS1B01G149800.1	Wheat	nucleus	96.5	93.56
KXG32580	Sorghum	cytosol	23.67	84.12
HORVU1Hr1G031950.1	Barley	plastid	87.44	83.89
Os10t0188300-01	Rice	cytosol, nucleus, plastid	35.02	77.96
GSMUA_Achr2P01000_001	Banana	cytosol, mitochondrion, nucleus	30.92	74.64
GSMUA_Achr11P...	Banana	cytosol	31.16	70.11
Zm00001d014321_P007	Maize	plastid	46.01	48.29
KXG38754	Sorghum	plastid	37.92	44.6
KRH48314	Soybean	endoplasmic reticulum	35.63	40.3
KRH65203	Soybean	nucleus	34.9	39.53
VIT_15s0048g01340.t01	Wine grape	nucleus	33.94	38.87
Solyc01g094000.2.1	Tomato	nucleus	35.63	38.06
CDY27369	Canola	nucleus	33.09	38.06
CDY37053	Canola	nucleus	33.21	37.98
PGSC0003DMT400000387	Potato	plastid	32.0	37.38
AT2G45620.1	Thale cress	nucleus	33.94	36.78
Bra039325.1-P	Field mustard	nucleus	33.45	36.45
TraesCS4D01G002900.1	Wheat	nucleus, peroxisome, plastid	9.18	13.55
TraesCS7D01G279400.1	Wheat	cytosol	8.21	12.08
TraesCS3D01G356000.1	Wheat	nucleus	8.45	10.64

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.10.2.6.2	Gene3D:3.30.460.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019538
GO:GO:0040029	GO:GO:0050265	GO:GO:0060964	GO:GO:0071076	GO:GO:1903705	InterPro:PAP_assoc
PFAM:PF01909	PFAM:PF03828	PANTHER:PTHR12271	PANTHER:PTHR12271:SF53	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301
SUPFAM:SSF81631	EnsemblPlantsGene:TraesCS1D01G133800	EnsemblPlants:TraesCS1D01G133800.1	TIGR:cd05402	SEG:seg	:

Description

No Description!

Coordinates

chr1D:-:164420543..164447961

Molecular Weight (calculated)

92132.7 Da

IEP (calculated)

7.442

GRAVY (calculated)

-0.555

Length

828 amino acids

Sequence
(BLAST)

001: MADASSGGGG RAPRPSTSPS DAKLEPSASA SLDGGLLLRL LQNPSPRPQQ QQNPVQSLAE PNNFFVDPAV AAVGPMFSSP PYVHVGGFAW PSSSSPQPQL
101: RSSDPRIARP LDPYAERGGG GFRSVDVVSR NRPEKPSSGA PPPGFGKPSP PKFATAWHSA TGREVHDVFG AMQQNRERQR EPNYHHPKGF GRTHNSENQE
201: MPTFTGGQGV LGRLPHEERN TSLIIGSRGP AAVMMYREQQ QQQHDHILSR TPPDANASAN AHGITGRIPY GDQHILQFAG GRTLIGEHHV HPSTGARIPH
301: KGQRQQEPCL ADISQGDQRW QGHASRNRSA GTVLEMLGKM PMKEKHQVTA PSSSSVDMDV RGDRGKKFLA EATGLEVGAG EVGFERGVHG RVVVDARNFK
401: VSCQNSEVRF AAKKEEEDAD SKEEDAIIEQ FMDTMVIEGN DEAKGMVVRN SGSRSKDFRS DSSRGHHVSS QRVRFQRRVR ACRYDIDQFT PNFLSIFDSL
501: VPSEEEIAKQ NQLVIALSRL INKEWPNSKL YLYGSCANSF GFSNSDIDLC LSIDDKEMSK VDIILKLADI LQAGNLQNIQ ALTRARVPIV KLMDPDTGLS
601: CDICVNNLLA VVNTKLLRDY AQIDQRLRQL AFIVKHWAKS RRVNETYQGT LSSYSYVIMC IHLLQLRRIL PCLQEMEATC YVTVDDNHYA YFDQVDKLSN
701: YGAHNNETLS SLLWAFFHYW AYQHDYTQDV ISIRTGKIIS KHMKDWTRRV GNDRHLICIE DPFETSHDLG RVVDKFSIKI LREEFERAAN ILQYDPNPSV
801: KLFEPYVPPP PSGTLDEEGI LSTAGAII

Best Arabidopsis Sequence Match ( AT2G45620.1 )
(BLAST)

001: MADGGAEPPA PPSSINAGEF LLSILHGSPS PSSQGPQHHQ SFALDPAIAA IGPTVNNPFP PSNWQSNGHR PSNHNPPSWP LAFSPPHNLS PNFLGFPQFP
101: PSPFTTNQFD GNQRVSPEDA YRLGFPGTTN PAIQSMVQQQ QQQQLPPPQS ETRKLVFGSF SGDATQSLNG LHNGNLKYDS NQHEQLMRHP QSTLSNSNMD
201: PNLSHHRNHD LHEQRGGHSG RGNWGHIGNN GRGLKSTPPP PPPGFSSNQR GWDMSLGSKD DDRGMGRNHD QAMGEHSKVW NQSVDFSAEA NRLRGLSIQN
301: ESKFNLSQQI DHPGPPKGAS LHSVSAADAA DSFSMLNKEA RRGGERREEL GQLSKAKREG NANSDEIEDF GEDIVKSLLL EDETGEKDAN DGKKDSKTSR
401: EKESRVDNRG QRLLGQKARM VKMYMACRND IHRYDATFIA IYKSLIPAEE ELEKQRQLMA HLENLVAKEW PHAKLYLYGS CANSFGFPKS DIDVCLAIEG
501: DDINKSEMLL KLAEILESDN LQNVQALTRA RVPIVKLMDP VTGISCDICI NNVLAVVNTK LLRDYAQIDV RLRQLAFIVK HWAKSRRVNE TYQGTLSSYA
601: YVLMCIHFLQ QRRPPILPCL QEMEPTYSVR VDNIRCTYFD NVDRLRNFGS NNRETIAELV WGFFNYWAYA HDYAYNVVSV RTGSILGKRE KDWTRRVGND
701: RHLICIEDPF ETSHDLGRVV DKFSIRVLRE EFERAARIMH QDPNPCAKLL EPYIPEDNNG QGHN

Arabidopsis Description

URT1UTP:RNA uridylyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O64642]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.