Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G002900.1 | Wheat | nucleus, peroxisome, plastid | 87.23 | 86.45 |
| TraesCS4B01G003200.1 | Wheat | nucleus | 85.61 | 83.95 |
| HORVU4Hr1G000070.38 | Barley | cytosol | 80.94 | 77.72 |
| Os09t0570600-01 | Rice | cytosol | 35.25 | 63.23 |
| Zm00001d019808_P003 | Maize | cytosol | 28.78 | 62.26 |
| OQU89042 | Sorghum | cytosol | 53.96 | 60.24 |
| TraesCS7A01G280800.1 | Wheat | cytosol | 47.3 | 46.8 |
| KRH53978 | Soybean | cytosol | 28.6 | 42.29 |
| Bra038277.1-P | Field mustard | cytosol | 27.52 | 33.7 |
| CDX99148 | Canola | cytosol | 27.34 | 33.41 |
| Solyc11g044900.1.1 | Tomato | cytosol | 32.91 | 33.15 |
| VIT_07s0031g02870.t01 | Wine grape | cytosol | 32.73 | 32.79 |
| CDX86037 | Canola | cytosol | 27.16 | 32.33 |
| PGSC0003DMT400076240 | Potato | nucleus | 34.89 | 31.54 |
| Solyc09g091860.2.1 | Tomato | nucleus | 33.81 | 28.06 |
| AT3G45760.1 | Thale cress | nucleus | 23.74 | 27.85 |
| PGSC0003DMT400059048 | Potato | plastid | 16.91 | 25.27 |
| AT3G45750.1 | Thale cress | cytosol | 30.04 | 24.49 |
| TraesCS3A01G362300.1 | Wheat | nucleus | 15.83 | 13.58 |
| TraesCS6A01G067000.1 | Wheat | cytosol | 13.85 | 13.05 |
| TraesCS1A01G139400.1 | Wheat | nucleus | 13.13 | 8.82 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G311100.1 | EnsemblPlantsGene:TraesCS4A01G311100 | Gene3D:1.10.1410.10 | Gene3D:3.30.460.10 | PANTHER:PTHR12271 | PANTHER:PTHR12271:SF62 |
| SEG:seg | SUPFAM:SSF81301 | SUPFAM:SSF81631 | TIGR:cd05402 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4A:-:603446017..603450038
Molecular Weight (calculated)
61125.4 Da
IEP (calculated)
9.586
GRAVY (calculated)
-0.306
Length
556 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPAAAPPP FSDATSYSDS GSDGSGDSEE EASPMVWDSQ DLRAQAERNE EQLLAAMSVD PGRLPALNDL LLEVYAVLRP KPVDYQQRNA LVDVFNKMAT
101: RIFGNDNGFP VVQAFGSFTM DLFTPKSDLD LSVNFSADIE DQCPRKKKMK VVRKFAKVLY SLQRDGIYCG VLPVVSAKVP IVNVIDRGTG IECDITVENK
201: DGMTRSMIVK LISSLDERFQ ILSYLVKTWA KIHDVNSPTA QTMSSMSIIS LVAFHLQTRH PPILPAFSAL LKDGSDFASV EKNISLFKGF GSANKESVAE
301: LFVTLMSKLL SVESLWEHGL CASNFEASWI SKTWKKGVGN LSVEDFLDRS QNFARAVGKA QMQKICTCLV VCASNLTDFM KGHIDASKLK TRLFGRLNPD
401: DLVSRPRPRR GKRDLSPEGR RGIQQERTKR AARHEEPAHQ VNATPGTARV ATVLPPVRHC RFPGIQSGGA QYVHKPWWPF RIVPSGFGYG ISVRLPPRAP
501: HPGPGILGRA PGDLIRPNSG IQLPKQGSLL PTPLRERSAS TRRPGSGEDE QLHPAP
101: RIFGNDNGFP VVQAFGSFTM DLFTPKSDLD LSVNFSADIE DQCPRKKKMK VVRKFAKVLY SLQRDGIYCG VLPVVSAKVP IVNVIDRGTG IECDITVENK
201: DGMTRSMIVK LISSLDERFQ ILSYLVKTWA KIHDVNSPTA QTMSSMSIIS LVAFHLQTRH PPILPAFSAL LKDGSDFASV EKNISLFKGF GSANKESVAE
301: LFVTLMSKLL SVESLWEHGL CASNFEASWI SKTWKKGVGN LSVEDFLDRS QNFARAVGKA QMQKICTCLV VCASNLTDFM KGHIDASKLK TRLFGRLNPD
401: DLVSRPRPRR GKRDLSPEGR RGIQQERTKR AARHEEPAHQ VNATPGTARV ATVLPPVRHC RFPGIQSGGA QYVHKPWWPF RIVPSGFGYG ISVRLPPRAP
501: HPGPGILGRA PGDLIRPNSG IQLPKQGSLL PTPLRERSAS TRRPGSGEDE QLHPAP
001: MGSRGNVAED KNVSSKVIRK KVNNTVSIAL KRYKIDSYIL LDLDKVLNDV YCSFRPVSAD YNTRKELVKN LNTMALDIYG KSEESSPVLE AYGSFVMDMY
101: SSQSDLDVSI NFGNGTSEIP REKKLEILKR FAKKLRSLQG EGQVKNVESI FSAKVPIVKF SDQGTGVECD LSVENKDGIL NSQIVRIISQ IDGRFQKLCL
201: LVKHWAKAHE VNSALHRTLN SVSITLLVAL HLQTQNPPIL PPFSMLLKDG MDPPNVEKRA QKFLNWGQRN QESLGRLFAT FFIKLQSVEF LWRQGLCVSV
301: LNGLWISKKW KKVGVGSISV EDFTNISQNV ARRVNGAGAK KIYSSINRTV EDIFEFLNDK VAGTDLRHRL FGKGSVVQIP PVAPLNGKTA GIHKVSGQQA
401: VVQPSPPVPR LNGKIAGTHR KQKVFAQQAV VEPRPPVLPL NGNIAGTHFR HESFRQQAVL QPLPPLRPVN GSIGGTHFRD RLFDQQVLVE PRPLLPPFSG
501: SIAETHFRHR SFPQEAVLDP RPSVQSRNVY SQQLHNNYRN GFSGPPEEHH TKRLCLGNRY RALEETGNWR EEERYEDPRG KRNRYVGNFN GLEEFREIPR
601: FGIHSNPLDD PYRQVPLNAG TNGHLVHHRH DGRYNGEEPM HVGQWQDYTR RVGSPPLQQT PPPYDRVSYE DFRPHLGRSF YH
101: SSQSDLDVSI NFGNGTSEIP REKKLEILKR FAKKLRSLQG EGQVKNVESI FSAKVPIVKF SDQGTGVECD LSVENKDGIL NSQIVRIISQ IDGRFQKLCL
201: LVKHWAKAHE VNSALHRTLN SVSITLLVAL HLQTQNPPIL PPFSMLLKDG MDPPNVEKRA QKFLNWGQRN QESLGRLFAT FFIKLQSVEF LWRQGLCVSV
301: LNGLWISKKW KKVGVGSISV EDFTNISQNV ARRVNGAGAK KIYSSINRTV EDIFEFLNDK VAGTDLRHRL FGKGSVVQIP PVAPLNGKTA GIHKVSGQQA
401: VVQPSPPVPR LNGKIAGTHR KQKVFAQQAV VEPRPPVLPL NGNIAGTHFR HESFRQQAVL QPLPPLRPVN GSIGGTHFRD RLFDQQVLVE PRPLLPPFSG
501: SIAETHFRHR SFPQEAVLDP RPSVQSRNVY SQQLHNNYRN GFSGPPEEHH TKRLCLGNRY RALEETGNWR EEERYEDPRG KRNRYVGNFN GLEEFREIPR
601: FGIHSNPLDD PYRQVPLNAG TNGHLVHHRH DGRYNGEEPM HVGQWQDYTR RVGSPPLQQT PPPYDRVSYE DFRPHLGRSF YH
Arabidopsis Description
Nucleotidyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q7Y216]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.