Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G327600.1 | Wheat | nucleus | 81.52 | 81.92 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 81.85 | 81.85 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 79.87 | 80.27 |
| Zm00001d012728_P001 | Maize | nucleus | 59.9 | 62.16 |
| Os01t0754500-01 | Rice | nucleus | 58.25 | 59.43 |
| EES03625 | Sorghum | nucleus | 54.95 | 56.73 |
| KRH55962 | Soybean | nucleus | 15.84 | 47.06 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 11.22 | 45.03 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 34.98 | 44.44 |
| Bra026268.1-P | Field mustard | nucleus | 30.86 | 39.29 |
| Bra010376.1-P | Field mustard | nucleus | 31.68 | 39.1 |
| CDX89188 | Canola | nucleus | 30.2 | 38.94 |
| AT4G28300.1 | Thale cress | nucleus | 31.85 | 38.91 |
| CDY14248 | Canola | nucleus | 31.52 | 38.9 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 31.68 | 38.79 |
| CDY18985 | Canola | nucleus | 30.53 | 38.62 |
| CDY25250 | Canola | nucleus | 31.02 | 38.21 |
| CDX97433 | Canola | nucleus | 31.02 | 38.21 |
| KRH25575 | Soybean | nucleus | 33.66 | 38.2 |
| CDY29896 | Canola | nucleus | 30.2 | 37.58 |
| Bra024211.1-P | Field mustard | nucleus | 30.2 | 37.58 |
| Solyc07g053990.2.1 | Tomato | nucleus | 30.86 | 37.55 |
| CDY67879 | Canola | nucleus | 29.21 | 37.03 |
| PGSC0003DMT400047245 | Potato | nucleus | 32.01 | 36.13 |
| PGSC0003DMT400034191 | Potato | nucleus | 32.34 | 35.77 |
| Solyc10g008340.2.1 | Tomato | extracellular | 32.01 | 35.6 |
| KRH26948 | Soybean | nucleus | 30.03 | 34.21 |
| KRH22387 | Soybean | nucleus | 29.04 | 32.77 |
| KRH55961 | Soybean | cytosol | 14.03 | 31.14 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 17.66 | 30.57 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 26.07 | 29.87 |
| TraesCS3A01G272000.1 | Wheat | plastid | 23.6 | 26.88 |
| TraesCS1A01G113700.1 | Wheat | nucleus | 19.8 | 20.91 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 20.79 | 20.9 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G292800.1 | EnsemblPlantsGene:TraesCS3A01G292800 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 |
| PFAM:PF07223 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:523556167..523561011
Molecular Weight (calculated)
66880.6 Da
IEP (calculated)
6.834
GRAVY (calculated)
-0.991
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSGGPSGR GPAGGTRSFD FGTDDVLCSY DDFAAPSEPK RLDPVDKDFH ESRFGRPSVK VYEQDSYAKE DVLSAVEKCM KKYADNLLRS LEGITSRLSQ
101: LEIYCYKLER SIGELRADVL RDETDLRLKS LEKHLHEVHR SIQILRDKQE LADTQKELAK FQLTHDESKK KEDVLTAFPE AKKPEEKRDA ASQQLALALP
201: HQVNSVALVP RASGPVQQYN DQPVQQTAPS SLVPQQDRYA VSQAIVYYPQ HQAPGNQDTQ GQQVQQEVQY LPVRPQAQDV HASSQPQSAN QTQPQSYTPY
301: QQQWQQQPSR SSPAPAAQQQ QPFSQPFPPP VQQSQLSNAH QFPTQPAQQS QLSNVQQFPT QPAQQSQLPN VQQFPTQPAQ QSQLSNAQQF PPPQQSNPHL
401: PQTAQPQHPH AQTQMRPPTP PPNYSGGYPP HQPLNPSPET LPGSAAMQGQ YNTIAPSGVT HSEGQYSYGG PGIPPSQPPP QHNMQRQQLP PPGQGSFGPP
501: PGKGGYPPQY APQGHPQGYN TSYGSYPPTG PSAVQAAQMP PGSSQHHMMR GHPYGDMIEK AITMGYPREQ VLNVIQRMTE SGQQIDFNAL LDRLNESGSG
601: APPRPW
101: LEIYCYKLER SIGELRADVL RDETDLRLKS LEKHLHEVHR SIQILRDKQE LADTQKELAK FQLTHDESKK KEDVLTAFPE AKKPEEKRDA ASQQLALALP
201: HQVNSVALVP RASGPVQQYN DQPVQQTAPS SLVPQQDRYA VSQAIVYYPQ HQAPGNQDTQ GQQVQQEVQY LPVRPQAQDV HASSQPQSAN QTQPQSYTPY
301: QQQWQQQPSR SSPAPAAQQQ QPFSQPFPPP VQQSQLSNAH QFPTQPAQQS QLSNVQQFPT QPAQQSQLPN VQQFPTQPAQ QSQLSNAQQF PPPQQSNPHL
401: PQTAQPQHPH AQTQMRPPTP PPNYSGGYPP HQPLNPSPET LPGSAAMQGQ YNTIAPSGVT HSEGQYSYGG PGIPPSQPPP QHNMQRQQLP PPGQGSFGPP
501: PGKGGYPPQY APQGHPQGYN TSYGSYPPTG PSAVQAAQMP PGSSQHHMMR GHPYGDMIEK AITMGYPREQ VLNVIQRMTE SGQQIDFNAL LDRLNESGSG
601: APPRPW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.