Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25250 | Canola | nucleus | 99.59 | 99.59 |
| CDY14248 | Canola | nucleus | 88.62 | 88.8 |
| CDY18985 | Canola | nucleus | 76.42 | 78.5 |
| CDX89188 | Canola | nucleus | 74.39 | 77.87 |
| AT4G28300.1 | Thale cress | nucleus | 78.46 | 77.82 |
| CDY29896 | Canola | nucleus | 76.02 | 76.8 |
| CDY67879 | Canola | nucleus | 73.37 | 75.52 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 19.72 | 64.24 |
| KRH55962 | Soybean | nucleus | 26.63 | 64.22 |
| Solyc07g053990.2.1 | Tomato | nucleus | 48.58 | 47.99 |
| KRH25575 | Soybean | nucleus | 50.2 | 46.25 |
| PGSC0003DMT400047245 | Potato | nucleus | 48.98 | 44.88 |
| Solyc10g008340.2.1 | Tomato | extracellular | 48.58 | 43.85 |
| PGSC0003DMT400034191 | Potato | nucleus | 47.56 | 42.7 |
| KRH26948 | Soybean | nucleus | 43.9 | 40.6 |
| KRH22387 | Soybean | nucleus | 42.68 | 39.11 |
| KRH55961 | Soybean | cytosol | 20.12 | 36.26 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 32.72 | 33.75 |
| Zm00001d012728_P001 | Maize | nucleus | 37.8 | 31.85 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 38.21 | 31.02 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 37.6 | 30.68 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 30.69 | 30.51 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 37.2 | 30.35 |
| EES03625 | Sorghum | nucleus | 36.18 | 30.32 |
| Os01t0754500-01 | Rice | nucleus | 36.59 | 30.3 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 21.54 | 30.29 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 37.2 | 30.2 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 25.81 | 24.01 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 25.41 | 23.54 |
| Os05t0561600-01 | Rice | plastid | 24.59 | 23.36 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 25.0 | 23.16 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 24.8 | 23.11 |
| CDX91045 | Canola | nucleus | 22.56 | 22.84 |
| OQU78421 | Sorghum | plastid | 23.78 | 22.54 |
| CDX85594 | Canola | nucleus | 22.15 | 22.38 |
| TraesCS3D01G271600.1 | Wheat | plastid | 23.58 | 21.64 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 22.76 | 21.46 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.37 | 21.46 |
| Zm00001d038998_P001 | Maize | plastid | 22.76 | 21.37 |
| Zm00001d043906_P002 | Maize | nucleus | 23.58 | 21.13 |
| TraesCS3A01G272000.1 | Wheat | plastid | 22.76 | 21.05 |
| EES03419 | Sorghum | nucleus | 22.56 | 20.63 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 18.5 | 20.0 |
| Zm00001d011562_P003 | Maize | plastid | 21.54 | 18.34 |
Protein Annotations
| EnsemblPlants:CDX97433 | EnsemblPlantsGene:GSBRNA2T00104586001 | InterPro:DUF1421 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 | PFAM:PF07223 |
| ProteinID:CDX97433 | ProteinID:CDX97433.1 | SEG:seg | UniParc:UPI0004EDAD41 | MapMan:35.2 | : |
Description
BnaC08g12980D
Coordinates
chrLK031899:+:616063..618170
Molecular Weight (calculated)
53627.1 Da
IEP (calculated)
6.347
GRAVY (calculated)
-0.948
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGASGRVN PGSKGFDFGS DDILCSYDDF TNHDSSDGSN SDPAIGASNS NKEFHKTRMA RSSVFPTGSY APPEDSLREE ELTATVERSM KKYSDNMMRF
101: LEGLSSRLSQ LELYCYNLDK TIGEMRSDLT RHNEEADVKL RSLDKHLQEV HRSVQVLRDK QELADTQKEL ARLQLVSKDS SSSSHSQHGE ERVATPVPEH
201: KKNENTSDAP NLQLALALPH QISPQPPTQP QQQQQYYMPP ATQLQNTPAP APVPPPPSQP QAPPAQAHFM PPPAAPSHPS SAQTQSFPQY QQNWPPQPQA
301: RPQSSGAYQP YTPPAPPSNQ SPVEPLPSSM QSPYGGPPQQ SMQAYGYGAP PAQVPQQTKM SYSPQTGDGY PPSGPPPPGY ANTMYEGGRI MQYPPSQPHQ
401: QQQQGHYMQG PPGGGYAPQQ HQAGGAGNTG TPSPVLRSKY GELIEKLVSM GFRGDHVMTV IQRMEESGQA IDFNALLDRL SVQSSGGPPR GW
101: LEGLSSRLSQ LELYCYNLDK TIGEMRSDLT RHNEEADVKL RSLDKHLQEV HRSVQVLRDK QELADTQKEL ARLQLVSKDS SSSSHSQHGE ERVATPVPEH
201: KKNENTSDAP NLQLALALPH QISPQPPTQP QQQQQYYMPP ATQLQNTPAP APVPPPPSQP QAPPAQAHFM PPPAAPSHPS SAQTQSFPQY QQNWPPQPQA
301: RPQSSGAYQP YTPPAPPSNQ SPVEPLPSSM QSPYGGPPQQ SMQAYGYGAP PAQVPQQTKM SYSPQTGDGY PPSGPPPPGY ANTMYEGGRI MQYPPSQPHQ
401: QQQQGHYMQG PPGGGYAPQQ HQAGGAGNTG TPSPVLRSKY GELIEKLVSM GFRGDHVMTV IQRMEESGQA IDFNALLDRL SVQSSGGPPR GW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.