Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026268.1-P | Field mustard | nucleus | 96.81 | 95.59 |
| CDY18985 | Canola | nucleus | 88.3 | 86.64 |
| CDY14248 | Canola | nucleus | 81.7 | 78.21 |
| CDY67879 | Canola | nucleus | 78.3 | 76.99 |
| AT4G28300.1 | Thale cress | nucleus | 80.64 | 76.41 |
| CDY29896 | Canola | nucleus | 77.66 | 74.95 |
| CDY25250 | Canola | nucleus | 78.3 | 74.8 |
| CDX97433 | Canola | nucleus | 77.87 | 74.39 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 20.64 | 64.24 |
| KRH55962 | Soybean | nucleus | 26.6 | 61.27 |
| Solyc07g053990.2.1 | Tomato | nucleus | 48.72 | 45.98 |
| PGSC0003DMT400047245 | Potato | nucleus | 49.36 | 43.2 |
| Solyc10g008340.2.1 | Tomato | extracellular | 50.0 | 43.12 |
| KRH25575 | Soybean | nucleus | 48.72 | 42.88 |
| PGSC0003DMT400034191 | Potato | nucleus | 49.57 | 42.52 |
| KRH26948 | Soybean | nucleus | 42.34 | 37.41 |
| KRH22387 | Soybean | nucleus | 41.28 | 36.13 |
| KRH55961 | Soybean | cytosol | 20.43 | 35.16 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 35.53 | 35.01 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 23.62 | 31.71 |
| Zm00001d012728_P001 | Maize | nucleus | 38.3 | 30.82 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 38.94 | 30.35 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 38.94 | 30.2 |
| EES03625 | Sorghum | nucleus | 37.66 | 30.15 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 38.72 | 30.03 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 38.51 | 30.02 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 31.49 | 29.9 |
| Os01t0754500-01 | Rice | nucleus | 37.02 | 29.29 |
| Os05t0561600-01 | Rice | plastid | 25.74 | 23.36 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 25.96 | 22.98 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 25.74 | 22.87 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 25.53 | 22.73 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 25.11 | 22.22 |
| OQU78421 | Sorghum | plastid | 24.47 | 22.16 |
| CDX91045 | Canola | nucleus | 22.55 | 21.81 |
| CDX85594 | Canola | nucleus | 22.55 | 21.77 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 23.62 | 21.26 |
| Zm00001d038998_P001 | Maize | plastid | 23.62 | 21.18 |
| Zm00001d043906_P002 | Maize | nucleus | 24.04 | 20.58 |
| TraesCS3D01G271600.1 | Wheat | plastid | 23.4 | 20.52 |
| EES03419 | Sorghum | nucleus | 23.4 | 20.45 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.19 | 20.34 |
| TraesCS3A01G272000.1 | Wheat | plastid | 22.98 | 20.3 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 18.51 | 19.12 |
| Zm00001d011562_P003 | Maize | plastid | 22.77 | 18.51 |
Protein Annotations
| EnsemblPlants:CDX89188 | EnsemblPlantsGene:GSBRNA2T00149358001 | InterPro:DUF1421 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 | PFAM:PF07223 |
| ProteinID:CDX89188 | ProteinID:CDX89188.1 | SEG:seg | UniParc:UPI0004EF3A26 | MapMan:35.2 | : |
Description
BnaA01g17050D
Coordinates
chrLK031858:-:30767..32779
Molecular Weight (calculated)
51689.9 Da
IEP (calculated)
6.192
GRAVY (calculated)
-0.952
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDRVNSGS KGFDFGSDDI LCSYDDFANQ EDSSNGPNSD PAIAANKEFH KTRMARSSVF PTSSYTPPDD SLSQDIINAT VERTMKKYSD NVMRFLEGIS
101: SRLSQLELYC YNLDKTIGEM RSELTRDNEE ADAKLRSMDK HLQEVHRSVQ ILRDKQELFD TQKELARLQL VQKDSSSSSH GEERVATPVP EPKKSENTSD
201: AHNNQLALAL PHQIAPQPQQ QHQQQYYRPP TSQLQNTPAP APVPAPPAQA QFMPPPPAPS HPSSAQPQSF PQYQQNWPPQ PQSSGAYPTY SLAPPSNQSP
301: VEPLPSTMQM QPRYAGPPQQ SMQAYGYGAP PPQAPQQTKM SYNPQTGDGY LPAGPPPPPG YANAMYESGR MQYPPPQPHQ QQHAHYMQGP QGGGYAPQQH
401: QAGGGNTGTP PPVSRSKYGE LIEKLVSMGF RGDHVMAVIQ RMEESGQAID FNALLDRLSA QSSGGPPRGW
101: SRLSQLELYC YNLDKTIGEM RSELTRDNEE ADAKLRSMDK HLQEVHRSVQ ILRDKQELFD TQKELARLQL VQKDSSSSSH GEERVATPVP EPKKSENTSD
201: AHNNQLALAL PHQIAPQPQQ QHQQQYYRPP TSQLQNTPAP APVPAPPAQA QFMPPPPAPS HPSSAQPQSF PQYQQNWPPQ PQSSGAYPTY SLAPPSNQSP
301: VEPLPSTMQM QPRYAGPPQQ SMQAYGYGAP PPQAPQQTKM SYNPQTGDGY LPAGPPPPPG YANAMYESGR MQYPPPQPHQ QQHAHYMQGP QGGGYAPQQH
401: QAGGGNTGTP PPVSRSKYGE LIEKLVSMGF RGDHVMAVIQ RMEESGQAID FNALLDRLSA QSSGGPPRGW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.