Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29896 | Canola | nucleus | 89.12 | 87.47 |
| CDX89188 | Canola | nucleus | 76.99 | 78.3 |
| CDY18985 | Canola | nucleus | 78.03 | 77.87 |
| CDY14248 | Canola | nucleus | 79.08 | 76.99 |
| AT4G28300.1 | Thale cress | nucleus | 76.36 | 73.59 |
| CDY25250 | Canola | nucleus | 75.73 | 73.58 |
| CDX97433 | Canola | nucleus | 75.52 | 73.37 |
| KRH55962 | Soybean | nucleus | 25.73 | 60.29 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 17.57 | 55.63 |
| Solyc07g053990.2.1 | Tomato | nucleus | 48.74 | 46.79 |
| KRH25575 | Soybean | nucleus | 49.58 | 44.38 |
| PGSC0003DMT400047245 | Potato | nucleus | 49.58 | 44.13 |
| PGSC0003DMT400034191 | Potato | nucleus | 48.95 | 42.7 |
| Solyc10g008340.2.1 | Tomato | extracellular | 48.54 | 42.57 |
| KRH26948 | Soybean | nucleus | 43.1 | 38.72 |
| KRH22387 | Soybean | nucleus | 42.68 | 37.99 |
| KRH55961 | Soybean | cytosol | 20.92 | 36.63 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 24.9 | 34.0 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 32.85 | 32.91 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 38.08 | 30.18 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 30.96 | 29.9 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 37.45 | 29.54 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 37.24 | 29.52 |
| EES03625 | Sorghum | nucleus | 36.19 | 29.47 |
| Zm00001d012728_P001 | Maize | nucleus | 35.77 | 29.28 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 37.03 | 29.21 |
| Os01t0754500-01 | Rice | nucleus | 34.73 | 27.95 |
| Os05t0561600-01 | Rice | plastid | 24.9 | 22.97 |
| CDX91045 | Canola | nucleus | 23.22 | 22.84 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 25.1 | 22.6 |
| CDX85594 | Canola | nucleus | 23.01 | 22.59 |
| OQU78421 | Sorghum | plastid | 24.48 | 22.54 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 24.9 | 22.5 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 24.48 | 22.41 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 24.9 | 22.41 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 24.06 | 21.78 |
| Zm00001d038998_P001 | Maize | plastid | 22.8 | 20.8 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.22 | 20.71 |
| TraesCS3D01G271600.1 | Wheat | plastid | 23.22 | 20.71 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 19.67 | 20.66 |
| TraesCS3A01G272000.1 | Wheat | plastid | 22.38 | 20.11 |
| EES03419 | Sorghum | nucleus | 22.59 | 20.07 |
| Zm00001d043906_P002 | Maize | nucleus | 22.59 | 19.67 |
| Zm00001d011562_P003 | Maize | plastid | 21.13 | 17.47 |
Protein Annotations
| EnsemblPlants:CDY67879 | EnsemblPlantsGene:GSBRNA2T00067611001 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 |
| PFAM:PF07223 | ProteinID:CDY67879 | ProteinID:CDY67879.1 | SEG:seg | UniParc:UPI0004EE1B94 | UniProt:A0A078JM39 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC07g50480DBnaC07g50480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM39]
Coordinates
chrLK036609:+:5058..7077
Molecular Weight (calculated)
52295.5 Da
IEP (calculated)
5.845
GRAVY (calculated)
-0.984
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGRVNSGF DFGSDDILRT YDDFTNNQDS SNGSNSDPSI AATNFNKEFH KTRMARSSVF PTSSYSPPED SLSQDVTATV ERTMKKYTDN VMRFLEGISS
101: RLSQLELYCY NLDKTIGEMR SDLTRDNEEA DVKLRSVEKH LQEVRRSVQI LRDKQELADT QKDLARLQVV QKDSSSPSHS QQSEETPVPE AKKSESSSDA
201: QNQQLALALP HQIPPQQQQQ YYMPPTSQLQ NTPAPAPVPA PPSQPQAPPA QAQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPSYSPAP
301: PSNQSPVEPS PSSMQMPSPY AGPPQQSMQG YGYGAPPPPQ APQQTKMSYS HQTGDAYLPS GPPPPGYANA MYEGGRMQYP PPQPPPQQQQ QGHYMQGPQG
401: GGYAPQQHQA GGGNTGTLPP VSRSKYGELI EKLVSMGFRG DHVMGVIQRM EESGQPIDFN ALLDRLSVQS SGGPPRGW
101: RLSQLELYCY NLDKTIGEMR SDLTRDNEEA DVKLRSVEKH LQEVRRSVQI LRDKQELADT QKDLARLQVV QKDSSSPSHS QQSEETPVPE AKKSESSSDA
201: QNQQLALALP HQIPPQQQQQ YYMPPTSQLQ NTPAPAPVPA PPSQPQAPPA QAQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPSYSPAP
301: PSNQSPVEPS PSSMQMPSPY AGPPQQSMQG YGYGAPPPPQ APQQTKMSYS HQTGDAYLPS GPPPPGYANA MYEGGRMQYP PPQPPPQQQQ QGHYMQGPQG
401: GGYAPQQHQA GGGNTGTLPP VSRSKYGELI EKLVSMGFRG DHVMGVIQRM EESGQPIDFN ALLDRLSVQS SGGPPRGW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.