CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97851
KRH03218
KRH28782
KRH28783
KRH31028
KRH57138
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	KRG97851	AT2G39740.1	21798944
AT4G28300.1	KRH31028	AT2G39740.1	21798944
AT4G28300.1	KRH28782	AT3G51180.1	21798944
AT4G28300.1	KRH28783	AT3G51180.1	21798944
AT4G28300.1	KRH69800	AT3G51180.1	21798944
AT4G28300.1	KRH69802	AT3G51180.1	21798944
AT4G28300.1	KRH76672	AT3G51180.1	21798944
AT4G28300.1	KRH03218	AT4G24700.1	21798944
AT4G28300.1	KRH57138	AT4G24700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26948	Soybean	nucleus	86.41	87.22
KRH55962	Soybean	nucleus	24.95	65.69
KRH25575	Soybean	nucleus	59.03	59.36
KRH55961	Soybean	cytosol	27.75	54.58
VIT_12s0028g03740.t01	Wine grape	nucleus	14.9	52.98
Solyc07g053990.2.1	Tomato	nucleus	43.76	47.19
AT4G28300.1	Thale cress	nucleus	41.53	44.96
PGSC0003DMT400047245	Potato	nucleus	44.88	44.88
PGSC0003DMT400034191	Potato	nucleus	44.51	43.61
Bra010376.1-P	Field mustard	nucleus	39.66	43.38
Solyc10g008340.2.1	Tomato	extracellular	43.95	43.3
CDY18985	Canola	nucleus	38.55	43.22
CDX97433	Canola	nucleus	39.11	42.68
CDY25250	Canola	nucleus	39.11	42.68
CDY67879	Canola	nucleus	37.99	42.68
CDY14248	Canola	nucleus	38.92	42.57
VIT_12s0028g03730.t01	Wine grape	nucleus	27.56	42.29
Bra026268.1-P	Field mustard	nucleus	37.06	41.81
CDY29896	Canola	nucleus	37.62	41.48
Bra024211.1-P	Field mustard	nucleus	37.62	41.48
CDX89188	Canola	nucleus	36.13	41.28
GSMUA_Achr4P07980_001	Banana	nucleus	29.42	33.12
Zm00001d012728_P001	Maize	nucleus	32.4	29.79
EES03625	Sorghum	nucleus	32.22	29.47
Os01t0754500-01	Rice	nucleus	32.59	29.46
TraesCS3A01G292800.1	Wheat	nucleus	32.77	29.04
HORVU3Hr1G072520.1	Barley	nucleus	32.59	29.02
TraesCS3D01G292600.1	Wheat	nucleus	32.59	28.88
TraesCS3B01G327600.1	Wheat	nucleus	32.4	28.86
GSMUA_Achr4P15050_001	Banana	nucleus	24.21	26.26
HORVU1Hr1G086930.4	Barley	nucleus	24.95	25.24
TraesCS1A01G394400.1	Wheat	nucleus	24.77	25.14
Os05t0561600-01	Rice	plastid	24.02	24.9
Zm00001d038998_P001	Maize	plastid	24.21	24.81
TraesCS1B01G422400.1	Wheat	nucleus	24.02	24.43
TraesCS1D01G402000.1	Wheat	nucleus	24.02	24.29
OQU78421	Sorghum	plastid	23.28	24.08
EES03419	Sorghum	nucleus	22.91	22.86
Zm00001d043906_P002	Maize	nucleus	23.09	22.59
Zm00001d009555_P003	Maize	endoplasmic reticulum, vacuole	21.6	22.22
Os01t0672800-01	Rice	cytosol, nucleus	18.62	21.98
TraesCS3B01G305700.1	Wheat	plastid	21.04	21.08
TraesCS3D01G271600.1	Wheat	plastid	20.67	20.71
TraesCS3A01G272000.1	Wheat	plastid	20.48	20.68
Zm00001d011562_P003	Maize	plastid	21.79	20.24
KRH56551	Soybean	nucleus	20.3	19.02
KRG93222	Soybean	nucleus	19.93	18.51

Protein Annotations

EMBL:ACUP02008411	EnsemblPlants:KRH22387	EnsemblPlantsGene:GLYMA_13G297200	EntrezGene:100782293	InterPro:DUF1421	PANTHER:PTHR31805
PANTHER:PTHR31805:SF3	PFAM:PF07223	ProteinID:KRH22387	ProteinID:KRH22387.1	SEG:seg	UniParc:UPI000233BC47
UniProt:K7M2P3	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:39606796..39610638

Molecular Weight (calculated)

59248.4 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.823

Length

537 amino acids

Sequence
(BLAST)

001: MASLPSGRSN GGSNGFDLGS GDILYSYDEE DYTNHDSSNG THIDPTKDSH ASRMGRTSIV PATAYSPSED SLSQDVIATV EKSMKTHADN LMQFLEGLGT
101: RLSQLELYCY NLDKSIGAMR SDLTCDHEET DSKLNSLDKH LQEVHRSVLI LKDRQELAET RKELAMLKHA QKESSSSSHS QSNEERSSPS SMDPKRIDNV
201: SDTQNQELAL ALPHQVTPRQ QPVASFYQVP APNVRQATQR PHYYLMPTPL PNPQAVNQLP QNQYWPSDLL YRIPQSTSSS QATQSPPVQQ FLQYQQLQHQ
301: QQQWLPQLPP QQVQVPPPQP PSAQSQVRPP SANVYTPYAT SQATNPLPTE TLPNSVPMQM PYSGIPPQGS SHGGGSSSGD AMPNGYSGAG RTVPQQPLLQ
401: LMRGSFSAQP ADVYGTSGAQ SHTTRPPASS YDVYDGENAR AHYPPQPSHY AQAGYPPTSA SHQNHAPHNL MVGSPSQSQF IRSHLYNDLI EKFVSMGFRG
501: DHVANIIQRM EETQLPIDFN SVHDRLDVHN PQRGWSG

Best Arabidopsis Sequence Match ( AT4G28300.1 )
(BLAST)

001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW

Arabidopsis Description

Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.