Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009045.1-P | |
| Bra013826.1-P | |
| Bra017054.1-P | |
| Bra031892.1-P | |
| Bra036832.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14248 | Canola | nucleus | 91.65 | 91.65 |
| Bra026268.1-P | Field mustard | nucleus | 76.37 | 78.78 |
| AT4G28300.1 | Thale cress | nucleus | 79.43 | 78.63 |
| Bra024211.1-P | Field mustard | nucleus | 75.76 | 76.39 |
| KRH55962 | Soybean | nucleus | 27.29 | 65.69 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 18.33 | 59.6 |
| Solyc07g053990.2.1 | Tomato | nucleus | 47.45 | 46.79 |
| KRH25575 | Soybean | nucleus | 50.71 | 46.63 |
| PGSC0003DMT400047245 | Potato | nucleus | 47.66 | 43.58 |
| Solyc10g008340.2.1 | Tomato | extracellular | 47.25 | 42.57 |
| PGSC0003DMT400034191 | Potato | nucleus | 46.64 | 41.79 |
| KRH26948 | Soybean | nucleus | 44.2 | 40.79 |
| KRH22387 | Soybean | nucleus | 43.38 | 39.66 |
| KRH55961 | Soybean | cytosol | 20.98 | 37.73 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 32.79 | 33.75 |
| Zm00001d012728_P001 | Maize | nucleus | 38.09 | 32.02 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 22.61 | 31.71 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 39.1 | 31.68 |
| EES03625 | Sorghum | nucleus | 37.27 | 31.18 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 38.09 | 31.01 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 37.88 | 30.85 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 37.88 | 30.69 |
| Os01t0754500-01 | Rice | nucleus | 36.46 | 30.13 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 30.14 | 29.9 |
| Os05t0561600-01 | Rice | plastid | 24.85 | 23.55 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 25.25 | 23.44 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 25.05 | 23.16 |
| OQU78421 | Sorghum | plastid | 24.03 | 22.74 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 24.44 | 22.6 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 24.24 | 22.54 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 23.01 | 21.65 |
| TraesCS3D01G271600.1 | Wheat | plastid | 23.63 | 21.64 |
| Zm00001d043906_P002 | Maize | nucleus | 24.03 | 21.49 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.42 | 21.46 |
| Zm00001d038998_P001 | Maize | plastid | 22.81 | 21.37 |
| EES03419 | Sorghum | nucleus | 23.22 | 21.19 |
| TraesCS3A01G272000.1 | Wheat | plastid | 22.81 | 21.05 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 18.94 | 20.44 |
| Bra023474.1-P | Field mustard | nucleus | 22.0 | 20.15 |
| Zm00001d011562_P003 | Maize | plastid | 21.59 | 18.34 |
Protein Annotations
Description
AT4G28300 (E=7e-081) | hydroxyproline-rich glycoprotein family protein
Coordinates
chrA08:-:14186551..14188374
Molecular Weight (calculated)
53731.4 Da
IEP (calculated)
6.450
GRAVY (calculated)
-1.012
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGASGRVN PGSKGFDFGS DDILCSYDDF TNHDSSNGSN SNKEFHKTRM AKSSVFPTGS YGPPEDCLRE ELTATVERSM KKYSDNMMRF LEGLSSRLSQ
101: LELYCYNLDK TIGEMRSDLT RDNEEADVKL RSLDKHLQEV HRSVQVLRDK QELADTQKEL ARLQLVSKDS SSSSHSQHGE ERVATPVPEH KKNENTSDAP
201: NLQLALALPH QIAPQPPAQP QQQQQQQQYY MPPATQLQNT PAPAPVPPPP SQPQAPPAQA HFMPPPAAPS HPSSAQTQSF PQYQQNWPPQ PQARPQSSGA
301: YQPYTPPAPP SNQSPVEPLP GSMQMQSPYG GPPQQSMQGY GYGGPPPPQA PQQIKMSYSP QTGDGYPPTG PPPPGYSNTM YEGGRMQYPP PQPQQQQQQQ
401: QQQGHYMQGP PGGGYAPQQH QAGGSGNTGT PSPVLRSKYG ELIEKLMSMG FRGDHVMAVI QRMEESGQAI DFNALLDRLS VQSSGGPPRG W
101: LELYCYNLDK TIGEMRSDLT RDNEEADVKL RSLDKHLQEV HRSVQVLRDK QELADTQKEL ARLQLVSKDS SSSSHSQHGE ERVATPVPEH KKNENTSDAP
201: NLQLALALPH QIAPQPPAQP QQQQQQQQYY MPPATQLQNT PAPAPVPPPP SQPQAPPAQA HFMPPPAAPS HPSSAQTQSF PQYQQNWPPQ PQARPQSSGA
301: YQPYTPPAPP SNQSPVEPLP GSMQMQSPYG GPPQQSMQGY GYGGPPPPQA PQQIKMSYSP QTGDGYPPTG PPPPGYSNTM YEGGRMQYPP PQPQQQQQQQ
401: QQQGHYMQGP PGGGYAPQQH QAGGSGNTGT PSPVLRSKYG ELIEKLMSMG FRGDHVMAVI QRMEESGQAI DFNALLDRLS VQSSGGPPRG W
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.