Factsheet for GSMUA_Achr4P07980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19920_001
GSMUA_Achr3P11230_001
GSMUA_Achr6P34020_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	GSMUA_Achr6P34020_001	AT2G39740.1	21798944
AT4G28300.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT4G28300.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P15050_001	Banana	nucleus	51.99	50.1
KRH55962	Soybean	nucleus	21.38	50.0
VIT_12s0028g03740.t01	Wine grape	nucleus	14.05	44.37
Os01t0754500-01	Rice	nucleus	45.91	36.87
HORVU3Hr1G072520.1	Barley	nucleus	45.91	36.32
TraesCS3B01G327600.1	Wheat	nucleus	45.7	36.15
EES03625	Sorghum	nucleus	44.44	36.12
TraesCS3D01G292600.1	Wheat	nucleus	45.49	35.81
CDX89188	Canola	nucleus	35.01	35.53
Bra026268.1-P	Field mustard	nucleus	35.43	35.5
Zm00001d012728_P001	Maize	nucleus	43.4	35.45
AT4G28300.1	Thale cress	nucleus	36.48	35.08
TraesCS3A01G292800.1	Wheat	nucleus	44.44	34.98
CDY18985	Canola	nucleus	35.01	34.86
Solyc07g053990.2.1	Tomato	nucleus	36.06	34.54
KRH25575	Soybean	nucleus	37.53	33.52
PGSC0003DMT400047245	Potato	nucleus	37.53	33.33
CDY29896	Canola	nucleus	33.75	33.06
Bra024211.1-P	Field mustard	nucleus	33.75	33.06
Solyc10g008340.2.1	Tomato	extracellular	37.74	33.03
CDY14248	Canola	nucleus	33.96	32.99
CDY67879	Canola	nucleus	32.91	32.85
Bra010376.1-P	Field mustard	nucleus	33.75	32.79
CDY25250	Canola	nucleus	33.75	32.72
CDX97433	Canola	nucleus	33.75	32.72
PGSC0003DMT400034191	Potato	nucleus	37.53	32.66
Os05t0561600-01	Rice	plastid	33.75	31.08
KRH26948	Soybean	nucleus	34.59	31.02
KRH22387	Soybean	nucleus	33.12	29.42
OQU78421	Sorghum	plastid	31.45	28.9
TraesCS1B01G422400.1	Wheat	nucleus	30.82	27.84
TraesCS1A01G394400.1	Wheat	nucleus	30.82	27.79
TraesCS1D01G402000.1	Wheat	nucleus	30.19	27.12
Zm00001d038998_P001	Maize	plastid	29.77	27.1
HORVU1Hr1G086930.4	Barley	nucleus	29.98	26.93
Zm00001d009555_P003	Maize	endoplasmic reticulum, vacuole	29.14	26.63
KRH55961	Soybean	cytosol	13.84	24.18
TraesCS3A01G272000.1	Wheat	plastid	26.0	23.31
TraesCS3B01G305700.1	Wheat	plastid	25.58	22.76
TraesCS3D01G271600.1	Wheat	plastid	25.37	22.57
Os01t0672800-01	Rice	cytosol, nucleus	21.38	22.42
Zm00001d043906_P002	Maize	nucleus	25.79	22.4
EES03419	Sorghum	nucleus	25.16	22.3
Zm00001d011562_P003	Maize	plastid	25.79	21.28
VIT_12s0028g03730.t01	Wine grape	nucleus	15.51	21.14
GSMUA_Achr2P14190_001	Banana	nucleus	20.55	18.22
GSMUA_Achr6P03180_001	Banana	nucleus	20.75	18.0

Protein Annotations

EnsemblPlants:GSMUA_Achr4P07980_001	EnsemblPlants:GSMUA_Achr4T07980_001	EnsemblPlantsGene:GSMUA_Achr4G07980_001	InterPro:DUF1421	ncoils:Coil	PANTHER:PTHR31805
PANTHER:PTHR31805:SF3	PFAM:PF07223	SEG:seg	UniParc:UPI00029515FC	UniProt:M0SM15	MapMan:35.2

Description

protein of unknown function DUF1421 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G07980_001]

Coordinates

chr4:-:5910443..5914516

Molecular Weight (calculated)

52935.6 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.808

Length

477 amino acids

Sequence
(BLAST)

001: MASGGSAGRA GASSSRSFDF GSDDVLCSYD DYAAQDTSIG KRSDPPGRDL HESRIGRPLV NIYEQEDYSR EDIISAVEKC MKKYADNLLR SLDGISGRLS
101: QLEIFCYKLE RSLGELRADF LQDQSEKDLK FKSLEKHLQE VHRSVQILRD KQELAETQKE LAKLQLVQKE SVEKNENAVA RSVLDTKKLD DKPDVANQQL
201: ALVLPRQTSA PAVLPAGTSQ PIQPYKEVPV QHQFQNNPIQ APPQQPPIAN QNQPPSLPRQ QLLPPQPGHP MPQQVVKLQQ PASQAQIITQ TPPSYPPYPS
301: QPVNPPPPLH NMQQQMQLPA VSQPPPLHNM QQQMQLPAVS QPPPLHNMQQ QMQPPVSQNS IGPQFGKGGY MGSATYPPTP YNPQAYHPAY NYPPSNLQAS
401: RNQQGPPSNG PAPHYETRLM RNHPYGDMIE KAIGMGYDGN QVMSLVQRMA ETGQPMDFNS LLDRLNGQAA GATPRAW

Best Arabidopsis Sequence Match ( AT4G28300.1 )
(BLAST)

001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW

Arabidopsis Description

Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.