Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03419 | Sorghum | nucleus | 84.34 | 86.06 |
| Zm00001d011562_P003 | Maize | plastid | 65.76 | 62.46 |
| TraesCS3D01G271600.1 | Wheat | plastid | 59.74 | 61.19 |
| TraesCS3B01G305700.1 | Wheat | plastid | 59.2 | 60.63 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 48.27 | 58.24 |
| TraesCS3A01G272000.1 | Wheat | plastid | 56.1 | 57.89 |
| Zm00001d038998_P001 | Maize | plastid | 39.16 | 41.03 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 38.43 | 40.42 |
| KRH55962 | Soybean | nucleus | 12.57 | 33.82 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 8.38 | 30.46 |
| Zm00001d012728_P001 | Maize | nucleus | 27.69 | 26.03 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 22.4 | 25.79 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 22.95 | 25.45 |
| CDY18985 | Canola | nucleus | 21.86 | 25.05 |
| KRH25575 | Soybean | nucleus | 24.23 | 24.91 |
| Bra026268.1-P | Field mustard | nucleus | 20.95 | 24.16 |
| KRH26948 | Soybean | nucleus | 23.32 | 24.06 |
| CDX89188 | Canola | nucleus | 20.58 | 24.04 |
| CDY14248 | Canola | nucleus | 21.49 | 24.03 |
| Bra010376.1-P | Field mustard | nucleus | 21.49 | 24.03 |
| AT4G28300.1 | Thale cress | nucleus | 21.49 | 23.79 |
| CDY25250 | Canola | nucleus | 21.13 | 23.58 |
| CDX97433 | Canola | nucleus | 21.13 | 23.58 |
| KRH22387 | Soybean | nucleus | 22.59 | 23.09 |
| Solyc10g008340.2.1 | Tomato | extracellular | 22.59 | 22.75 |
| PGSC0003DMT400034191 | Potato | nucleus | 22.59 | 22.63 |
| CDY67879 | Canola | nucleus | 19.67 | 22.59 |
| Solyc07g053990.2.1 | Tomato | nucleus | 20.4 | 22.49 |
| CDY29896 | Canola | nucleus | 19.49 | 21.97 |
| Bra024211.1-P | Field mustard | nucleus | 19.49 | 21.97 |
| PGSC0003DMT400047245 | Potato | nucleus | 21.31 | 21.79 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 13.84 | 21.71 |
| KRH55961 | Soybean | cytosol | 10.2 | 20.51 |
| Zm00001d039686_P001 | Maize | nucleus | 15.3 | 14.79 |
| Zm00001d008708_P001 | Maize | extracellular | 14.75 | 14.39 |
Protein Annotations
| EnsemblPlants:Zm00001d043906_P002 | EnsemblPlants:Zm00001d043906_T002 | EnsemblPlantsGene:Zm00001d043906 | EntrezGene:100194193 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF5 |
| ProteinID:ONM39413.1 | SEG:seg | UniParc:UPI00084271CD | UniProt:A0A1D6NG35 | MapMan:35.2 | : |
Description
Hydroxyproline-rich glycoprotein family protein
Coordinates
chr3:+:213463797..213466549
Molecular Weight (calculated)
59914.2 Da
IEP (calculated)
6.886
GRAVY (calculated)
-0.605
Length
549 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPARPAAT SVSGAFGLPP DARCSYDQPR RRETDSSGGG GAGCRAGQGL QDERMVQTFV AAYAQPPPHQ DGFYPKEAVM AAVEECMRKQ ADALLHSLDG
101: IGGRLSQLEL YCYKLERSIG ELRSDVMDYH SESTTNFRCI DKNLGQVHKS LQVLQDRQDL AETPKELSKL QIAHEAPSHQ KGEATGFPML APRENDHITQ
201: APKHEVALLR LHQVNGMQSP AVQVQTSGGF VLQHLVPVSL STQHDQQQLN QAPVYYVQSQ DHAKSTESKA LEPLVQGVQP LVHNPEVMAQ VELPQKPNQA
301: TELYPQPQNH RLQMPTQQVD SHTWHPQQPM VQQHQYIIQQ VSRHMAQQQS SSPHSQSAQA TPLFPPFSSP KPASSNTDPI TRSMAGQPPY SSSQQQHEVA
401: HSFYGQGNTI LVPVADHNAQ HQQSQSVQLH SQGTCLPQPS KPSHCSVASY AVQGNGQTYS STYKNPSNCP ATVVALLPQP PATASMAYHP LGPQVVHNHP
501: FGNMVETASV VGYSRDQGEI LPVVTAVQPV MVDKLNAGSN VTSPREWSA
101: IGGRLSQLEL YCYKLERSIG ELRSDVMDYH SESTTNFRCI DKNLGQVHKS LQVLQDRQDL AETPKELSKL QIAHEAPSHQ KGEATGFPML APRENDHITQ
201: APKHEVALLR LHQVNGMQSP AVQVQTSGGF VLQHLVPVSL STQHDQQQLN QAPVYYVQSQ DHAKSTESKA LEPLVQGVQP LVHNPEVMAQ VELPQKPNQA
301: TELYPQPQNH RLQMPTQQVD SHTWHPQQPM VQQHQYIIQQ VSRHMAQQQS SSPHSQSAQA TPLFPPFSSP KPASSNTDPI TRSMAGQPPY SSSQQQHEVA
401: HSFYGQGNTI LVPVADHNAQ HQQSQSVQLH SQGTCLPQPS KPSHCSVASY AVQGNGQTYS STYKNPSNCP ATVVALLPQP PATASMAYHP LGPQVVHNHP
501: FGNMVETASV VGYSRDQGEI LPVVTAVQPV MVDKLNAGSN VTSPREWSA
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.