Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 2
- golgi 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU78421 | Sorghum | plastid | 75.29 | 75.72 |
| Zm00001d038998_P001 | Maize | plastid | 72.22 | 71.95 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 58.24 | 57.25 |
| Os05t0561600-01 | Rice | plastid | 54.02 | 54.44 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 53.83 | 52.92 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 52.3 | 51.61 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 51.92 | 51.33 |
| Zm00001d043906_P002 | Maize | nucleus | 40.42 | 38.43 |
| Zm00001d011562_P003 | Maize | plastid | 34.87 | 31.49 |
| KRH55962 | Soybean | nucleus | 11.49 | 29.41 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 26.63 | 29.14 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 8.43 | 29.14 |
| Zm00001d012728_P001 | Maize | nucleus | 29.69 | 26.54 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 24.14 | 25.45 |
| KRH25575 | Soybean | nucleus | 25.1 | 24.53 |
| CDY67879 | Canola | nucleus | 22.41 | 24.48 |
| Solyc07g053990.2.1 | Tomato | nucleus | 23.18 | 24.3 |
| Bra024211.1-P | Field mustard | nucleus | 22.41 | 24.02 |
| CDY29896 | Canola | nucleus | 22.41 | 24.02 |
| CDX89188 | Canola | nucleus | 21.26 | 23.62 |
| CDY18985 | Canola | nucleus | 21.65 | 23.59 |
| PGSC0003DMT400034191 | Potato | nucleus | 24.71 | 23.54 |
| Bra026268.1-P | Field mustard | nucleus | 21.46 | 23.53 |
| Solyc10g008340.2.1 | Tomato | extracellular | 24.52 | 23.49 |
| KRH26948 | Soybean | nucleus | 23.75 | 23.31 |
| Bra010376.1-P | Field mustard | nucleus | 21.65 | 23.01 |
| AT4G28300.1 | Thale cress | nucleus | 21.84 | 22.98 |
| CDY25250 | Canola | nucleus | 21.65 | 22.97 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 15.33 | 22.86 |
| CDY14248 | Canola | nucleus | 21.46 | 22.81 |
| CDX97433 | Canola | nucleus | 21.46 | 22.76 |
| PGSC0003DMT400047245 | Potato | nucleus | 23.37 | 22.72 |
| KRH22387 | Soybean | nucleus | 22.22 | 21.6 |
| KRH55961 | Soybean | cytosol | 10.54 | 20.15 |
| Zm00001d008708_P001 | Maize | extracellular | 18.97 | 17.58 |
| Zm00001d039686_P001 | Maize | nucleus | 18.01 | 16.55 |
Protein Annotations
| EnsemblPlants:Zm00001d009555_P003 | EnsemblPlants:Zm00001d009555_T003 | EnsemblPlantsGene:Zm00001d009555 | EntrezGene:100274598 | InterPro:DUF1421 | ncoils:Coil |
| PANTHER:PTHR31805 | PANTHER:PTHR31805:SF4 | PFAM:PF07223 | ProteinID:AQK92082.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0008457870 | UniProt:A0A1D6FJZ5 | MapMan:35.2 | : | : |
Description
Hydroxyproline-rich glycoprotein family protein
Coordinates
chr8:+:70016524..70019909
Molecular Weight (calculated)
57805.3 Da
IEP (calculated)
7.357
GRAVY (calculated)
-0.494
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVHRAALFW FVPTVAGLSS ALRVTADMDL RWPLLKPRDF QENRLLMSFV NFHEQEKISK EIVTHAIESC MKKQADNLLN SLDVISGRLS QLELYCYRLE
101: RSIGELRSDV MDYHNEANLN FRCVEKQVKE VQKSVQAVQE KQELAETQKE MTKLQIVHED SAQKSEGTAP SVFMNRENEV ALVPLHQVNA VQSPPVQFQS
201: CSGLILQQLM PVQDQQRSNQ TAVYCMRGQS HLEHRQAQMF EAAGQSLQTH TRKTQPPTVV EVSQVTSQAP EFYPHPQHQW QHQTGQQVFS QARQPQPHVL
301: QQQYSNIQQG PAQMVQLQTS SPHAHSTPQV TVVYPPYGPH QSACGNAEAR SGGIVVPPSY STISSSHRKH HEAAPVYVQS NTVSVPLAEQ HQQLHSLGNG
401: SFVPQPSKVS PCGLASYTVQ GNAQTYSPAY GSPSSNPATI VAVLNQQAHG SSPMVLHHLG PQSVLNHPID IAEKVTRMGY SKDQVEGLAL RMVAAGQPAD
501: HNPLHDRLSS VSHGVAPHAW SG
101: RSIGELRSDV MDYHNEANLN FRCVEKQVKE VQKSVQAVQE KQELAETQKE MTKLQIVHED SAQKSEGTAP SVFMNRENEV ALVPLHQVNA VQSPPVQFQS
201: CSGLILQQLM PVQDQQRSNQ TAVYCMRGQS HLEHRQAQMF EAAGQSLQTH TRKTQPPTVV EVSQVTSQAP EFYPHPQHQW QHQTGQQVFS QARQPQPHVL
301: QQQYSNIQQG PAQMVQLQTS SPHAHSTPQV TVVYPPYGPH QSACGNAEAR SGGIVVPPSY STISSSHRKH HEAAPVYVQS NTVSVPLAEQ HQQLHSLGNG
401: SFVPQPSKVS PCGLASYTVQ GNAQTYSPAY GSPSSNPATI VAVLNQQAHG SSPMVLHHLG PQSVLNHPID IAEKVTRMGY SKDQVEGLAL RMVAAGQPAD
501: HNPLHDRLSS VSHGVAPHAW SG
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.