Factsheet for PGSC0003DMT400047245

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009142
PGSC0003DMT400009146
PGSC0003DMT400046830
PGSC0003DMT400061199
PGSC0003DMT400092162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	PGSC0003DMT400061199	AT2G39740.1	21798944
AT4G28300.1	PGSC0003DMT400009142	AT3G51180.1	21798944
AT4G28300.1	PGSC0003DMT400009146	AT3G51180.1	21798944
AT4G28300.1	PGSC0003DMT400092162	AT3G51180.1	21798944
AT4G28300.1	PGSC0003DMT400046830	AT4G24700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053990.2.1	Tomato	nucleus	86.59	93.37
PGSC0003DMT400034191	Potato	nucleus	76.35	74.82
VIT_12s0028g03740.t01	Wine grape	nucleus	20.48	72.85
KRH55962	Soybean	nucleus	26.44	69.61
KRH25575	Soybean	nucleus	54.56	54.87
AT4G28300.1	Thale cress	nucleus	48.98	53.02
Bra026268.1-P	Field mustard	nucleus	44.32	50.0
VIT_12s0028g03730.t01	Wine grape	nucleus	32.59	50.0
CDY29896	Canola	nucleus	45.25	49.9
Bra024211.1-P	Field mustard	nucleus	45.25	49.9
CDY18985	Canola	nucleus	44.32	49.69
CDY67879	Canola	nucleus	44.13	49.58
CDX89188	Canola	nucleus	43.2	49.36
CDY25250	Canola	nucleus	44.88	48.98
CDX97433	Canola	nucleus	44.88	48.98
CDY14248	Canola	nucleus	43.95	48.07
Bra010376.1-P	Field mustard	nucleus	43.58	47.66
KRH55961	Soybean	cytosol	24.21	47.62
KRH26948	Soybean	nucleus	46.37	46.8
KRH22387	Soybean	nucleus	44.88	44.88
GSMUA_Achr4P07980_001	Banana	nucleus	33.33	37.53
EES03625	Sorghum	nucleus	37.62	34.41
Zm00001d012728_P001	Maize	nucleus	37.24	34.25
Os01t0754500-01	Rice	nucleus	37.43	33.84
GSMUA_Achr4P15050_001	Banana	nucleus	31.1	33.74
HORVU3Hr1G072520.1	Barley	nucleus	36.13	32.17
TraesCS3A01G292800.1	Wheat	nucleus	36.13	32.01
TraesCS3D01G292600.1	Wheat	nucleus	35.94	31.85
TraesCS3B01G327600.1	Wheat	nucleus	35.57	31.68
Os05t0561600-01	Rice	plastid	24.95	25.87
HORVU1Hr1G086930.4	Barley	nucleus	24.77	25.05
TraesCS1A01G394400.1	Wheat	nucleus	24.39	24.76
TraesCS1D01G402000.1	Wheat	nucleus	24.39	24.67
TraesCS1B01G422400.1	Wheat	nucleus	23.65	24.05
OQU78421	Sorghum	plastid	23.09	23.89
Zm00001d038998_P001	Maize	plastid	22.91	23.47
Zm00001d009555_P003	Maize	endoplasmic reticulum, vacuole	22.72	23.37
Os01t0672800-01	Rice	cytosol, nucleus	19.74	23.3
Zm00001d043906_P002	Maize	nucleus	21.79	21.31
TraesCS3D01G271600.1	Wheat	plastid	21.23	21.27
EES03419	Sorghum	nucleus	21.23	21.19
TraesCS3B01G305700.1	Wheat	plastid	21.04	21.08
TraesCS3A01G272000.1	Wheat	plastid	20.67	20.86
PGSC0003DMT400032802	Potato	nucleus	21.04	20.81
Zm00001d011562_P003	Maize	plastid	20.86	19.38
PGSC0003DMT400072130	Potato	nucleus	17.69	18.27

Protein Annotations

EnsemblPlants:PGSC0003DMT400047245	EnsemblPlantsGene:PGSC0003DMG400018344	EntrezGene:102595033	InterPro:DUF1421	ncoils:Coil	PANTHER:PTHR31805
PANTHER:PTHR31805:SF3	PFAM:PF07223	PGSC:PGSC0003DMG400018344	RefSeq:XP_006357482.1	SEG:seg	UniParc:UPI000294D2B1
UniProt:M1BKD3	MapMan:35.2	:	:	:	:

Description

Hydroxyproline-rich glycoprotein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018344]

Coordinates

chr7:+:49159002..49162773

Molecular Weight (calculated)

59462.1 Da

IEP (calculated)

6.458

GRAVY (calculated)

-0.931

Length

537 amino acids

Sequence
(BLAST)

001: MASGSSGRSN NAGSKGFDFA SDDILCSYED YANQDPSNGT HSDPVIAANS AKEFHKSRMT RSSMFPAPAY SPPEESSFNQ DMICTIEKTM KKYTDNLMRF
101: LEGISSRLSQ LELYCYNLDK SIGEMRSDLV RDHGEADSKL KALEKHVQEV HRSVQILRDK QELAETQKEL AKLQLAQKGS TSSSNSQQNE ERNAQHLSDD
201: KKSDDSPEVH GQQLALALPH QVAPQASLTN RPVEQPQQPP VPPPQSIPSQ SMPQSQGYYL PPPQMANQQA PTQLSQGQFL SSDLQYRNPQ MQVTPQPAPP
301: QVNQTLQLQS MPQYQQQWAQ QVPQQVQQSQ NPTMQQQARP TSPAVYPSYL HSQPNPTPET MPNSMPMQVP FSGVSQPVAS RPEAMPYGYD RSGRPLQQQP
401: AAPHLKPSFG APGDGYAASG AHPTLSPGNA YVMYDGEGTR THPPPQPNFQ QSRYPPSSFP PQNQQPTPSP NLMVRPTQQV RNHPYNELIE KLVSMGYRGD
501: HVVNVIQRLE ESGQPVDFNA ILDSMNGHSS GGSQRGW

Best Arabidopsis Sequence Match ( AT4G28300.1 )
(BLAST)

001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW

Arabidopsis Description

Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.