Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g086520.2.1 | Tomato | nucleus | 72.38 | 72.11 |
| PGSC0003DMT400072130 | Potato | nucleus | 50.28 | 52.5 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 51.2 | 49.38 |
| KRH56551 | Soybean | nucleus | 48.43 | 45.9 |
| KRG93222 | Soybean | nucleus | 48.25 | 45.33 |
| CDX91045 | Canola | nucleus | 37.02 | 41.36 |
| CDX85594 | Canola | nucleus | 36.83 | 41.07 |
| AT3G01560.1 | Thale cress | nucleus | 37.02 | 39.33 |
| Bra023474.1-P | Field mustard | nucleus | 38.31 | 38.81 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 38.86 | 38.36 |
| AT5G14540.1 | Thale cress | nucleus | 37.57 | 37.29 |
| TraesCS1A01G113700.1 | Wheat | nucleus | 38.12 | 36.06 |
| Zm00001d008708_P001 | Maize | extracellular | 37.02 | 35.7 |
| Os01t0169900-01 | Rice | plasma membrane | 37.94 | 35.52 |
| Os05t0169400-01 | Rice | plastid | 34.99 | 35.45 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 37.2 | 35.38 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 37.57 | 35.29 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 37.2 | 35.19 |
| EES19114 | Sorghum | nucleus | 37.57 | 35.05 |
| Zm00001d039686_P001 | Maize | nucleus | 36.46 | 34.86 |
| TraesCS3D01G093200.1 | Wheat | nucleus | 37.57 | 34.63 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 38.31 | 34.49 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 37.75 | 34.45 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 34.07 | 34.39 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 37.94 | 34.16 |
| KXG31759 | Sorghum | nucleus | 36.65 | 33.84 |
| PGSC0003DMT400034191 | Potato | nucleus | 23.2 | 22.99 |
| PGSC0003DMT400047245 | Potato | nucleus | 20.81 | 21.04 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032802 | EnsemblPlantsGene:PGSC0003DMG400012598 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF2 |
| PFAM:PF07223 | PGSC:PGSC0003DMG400012598 | SEG:seg | UniParc:UPI000295FC73 | UniProt:M1AY29 | MapMan:35.2 |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012598]
Coordinates
chr2:+:47316045..47319433
Molecular Weight (calculated)
59127.7 Da
IEP (calculated)
6.471
GRAVY (calculated)
-0.834
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKQIMDLSN SQNSSNNNDF IDLVNPQADH HISGGDQKKE DIVPSYEFHP IRPIGSSSPK SNIDSSNVGV ARAWNSADSK NNTESNIRNY GSLDSIDPTK
101: VIVEKDLGSV YSSLLSEIDH TVKKYADNLL HAVEGVSARL SQLETRNRQI DNSVDELKLS VGNSHGVTDG KLRQLENILR EVQDGVQVIR DKQEIMDAQL
201: QLMKSQAPKI EQQAETHSTT HTDSSQPTTP TPLHSHQQFP PVALTQPPST LAPLPHPQQN LPYQVQLQNQ FPQNPIPSHP QPEAYYPPAG QAPENLSRQY
301: QPPVAQQHQP TPPPPHQQHQ STHQPIYSQP PPPPPAQPHL PHPSQPQPQP LVGHHREETP FVPSQTYPPP SIRQPPHSSS GAPPSQQLYG TPPNIFEPPS
401: SRPGLGYSGV YGPSSVPGEP YPYSSSPGQY GSGSSMKPLQ VSLPTMGQSG SSGYQQLPTA RILPQALPTA SAVSGGSSSP GTGNRVPIDD VVDKVTNMGF
501: PRDQVRATVR RLTESGQTVD LNTVLDKLMN DGEVQPPRGW LGR
101: VIVEKDLGSV YSSLLSEIDH TVKKYADNLL HAVEGVSARL SQLETRNRQI DNSVDELKLS VGNSHGVTDG KLRQLENILR EVQDGVQVIR DKQEIMDAQL
201: QLMKSQAPKI EQQAETHSTT HTDSSQPTTP TPLHSHQQFP PVALTQPPST LAPLPHPQQN LPYQVQLQNQ FPQNPIPSHP QPEAYYPPAG QAPENLSRQY
301: QPPVAQQHQP TPPPPHQQHQ STHQPIYSQP PPPPPAQPHL PHPSQPQPQP LVGHHREETP FVPSQTYPPP SIRQPPHSSS GAPPSQQLYG TPPNIFEPPS
401: SRPGLGYSGV YGPSSVPGEP YPYSSSPGQY GSGSSMKPLQ VSLPTMGQSG SSGYQQLPTA RILPQALPTA SAVSGGSSSP GTGNRVPIDD VVDKVTNMGF
501: PRDQVRATVR RLTESGQTVD LNTVLDKLMN DGEVQPPRGW LGR
001: MNTCQFMDKQ IMDLSSSSSL PSTDFIDLMN NHDGDDHQKK QVIGDNGLDS KKEVIVPSYD FHPIRPTTAA RLSHSALDLA GSTTRVNWSA SDYKPVSTTS
101: PNTNFGSLDS IEPSKLVPDK GQNVFNTTIM SEIIDRTMKK HTDTLLHVME GVSARLSQLE TRTHNLENLV DDLKVSVDNS HGSTDGKMRQ LKNILVEVQS
201: GVQLLKDKQE ILEAQLSKHQ VSNQHAKTHS LHVDPTAQSP APVPMQQFPL TSFPQPPSST AAPSQPPSSQ LPPQLPTQFS SQQEPYCPPP SHPQPPPSNP
301: PPYQAPQTQT PHQPSYQSPP QQPQYPQQPP PSSGYNPEEQ PPYQMQSYPP NPPRQQPPAG STPSQQFYNP PQPQPSMYDG AGGRSNSGFP SGYLSEPYTY
401: SGSPMSSAKP PHISSNGTGY PQLSNSRPLP HALPMVSAVS SGGGSSSPRS ESRAPIDDVI DRVTTMGFPR DQVRATVRKL TENGQAVDLN VVLDKLMNEG
501: GAPPGGFFGG R
101: PNTNFGSLDS IEPSKLVPDK GQNVFNTTIM SEIIDRTMKK HTDTLLHVME GVSARLSQLE TRTHNLENLV DDLKVSVDNS HGSTDGKMRQ LKNILVEVQS
201: GVQLLKDKQE ILEAQLSKHQ VSNQHAKTHS LHVDPTAQSP APVPMQQFPL TSFPQPPSST AAPSQPPSSQ LPPQLPTQFS SQQEPYCPPP SHPQPPPSNP
301: PPYQAPQTQT PHQPSYQSPP QQPQYPQQPP PSSGYNPEEQ PPYQMQSYPP NPPRQQPPAG STPSQQFYNP PQPQPSMYDG AGGRSNSGFP SGYLSEPYTY
401: SGSPMSSAKP PHISSNGTGY PQLSNSRPLP HALPMVSAVS SGGGSSSPRS ESRAPIDDVI DRVTTMGFPR DQVRATVRKL TENGQAVDLN VVLDKLMNEG
501: GAPPGGFFGG R
Arabidopsis Description
Proline-rich receptor-like kinase, putative (DUF1421) [Source:UniProtKB/TrEMBL;Acc:F4J3J5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.