Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G113700.1 | Wheat | nucleus | 92.21 | 92.86 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 88.75 | 89.84 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 86.33 | 86.93 |
| Os05t0169400-01 | Rice | plastid | 61.94 | 66.79 |
| EES19114 | Sorghum | nucleus | 62.46 | 62.03 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 56.23 | 53.9 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 43.25 | 44.41 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 41.7 | 43.82 |
| KRH56551 | Soybean | nucleus | 41.35 | 41.71 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 38.75 | 41.64 |
| KRG93222 | Soybean | nucleus | 40.66 | 40.66 |
| Solyc02g086520.2.1 | Tomato | nucleus | 37.02 | 39.27 |
| AT3G01560.1 | Thale cress | nucleus | 34.6 | 39.14 |
| PGSC0003DMT400072130 | Potato | nucleus | 34.26 | 38.08 |
| PGSC0003DMT400032802 | Potato | nucleus | 35.29 | 37.57 |
| CDX91045 | Canola | nucleus | 31.49 | 37.45 |
| CDX85594 | Canola | nucleus | 31.49 | 37.37 |
| AT5G14540.1 | Thale cress | nucleus | 34.43 | 36.38 |
| Solyc12g035240.1.1 | Tomato | nucleus | 30.97 | 36.31 |
| Bra023474.1-P | Field mustard | nucleus | 33.22 | 35.82 |
| VIT_17s0000g08970.t01 | Wine grape | nucleus | 28.2 | 34.75 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 20.07 | 19.24 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 15.92 | 17.42 |
| TraesCS3B01G305700.1 | Wheat | plastid | 14.71 | 15.86 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G134000.1 | EnsemblPlantsGene:TraesCS1B01G134000 | InterPro:DUF1421 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF12 | PFAM:PF07223 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:169662146..169665820
Molecular Weight (calculated)
60744.5 Da
IEP (calculated)
5.693
GRAVY (calculated)
-0.652
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSQFMDKQ ILGLAAAGAA SSPPSGGSGG GGGGQLFDLM GPNPQEDDVV ESHDLHARRG ASATEEVMVP SYDFQPIRTA AATAVAPAAP APAAANAWGS
101: LDANAASPKL QSAAMMEPRV LKKVSHEEER SNFNAVTIAD IDRTMKKYAD NLLHAMEGVS SRLAQLEGRT HHLEDSVGEL KLTVGNYNGS TDGKLRQFEN
201: TLQEVQAGVQ ILCDKQEIVE AQVQLAKLQV SKAEDVESEN ASAGQVDSRQ QPTAPQPTVQ PQHQAYPPSQ PTALPALPAP NAPPPPMVHN QPPPQFQGHL
301: PHPQLQSVAP APSVPTISQE SYYPPSTQTT EAAHQQYQAP PASQQQAPPA APQHYQHPPQ YAPYSQPPPP GSVNPQTAAA PLPHQPEEAA PYGPPAQSYP
401: PNVRPPSPYM PPPSGPVPPF YGPNPGMYEP PAVRPNSGPP PPYNAGYKQQ GGGGGFPEQY GYSGSPSHRG NAGMNSPSPF APTGASSAGS GNYGKLPTAQ
501: ILPQAAPVSS TPSASSGSRV AVDDVVDKVS TMGFSKEQVR ATVRRLTENG QNVDLNVVLD KLMNDTDAQP AQRGWFGR
101: LDANAASPKL QSAAMMEPRV LKKVSHEEER SNFNAVTIAD IDRTMKKYAD NLLHAMEGVS SRLAQLEGRT HHLEDSVGEL KLTVGNYNGS TDGKLRQFEN
201: TLQEVQAGVQ ILCDKQEIVE AQVQLAKLQV SKAEDVESEN ASAGQVDSRQ QPTAPQPTVQ PQHQAYPPSQ PTALPALPAP NAPPPPMVHN QPPPQFQGHL
301: PHPQLQSVAP APSVPTISQE SYYPPSTQTT EAAHQQYQAP PASQQQAPPA APQHYQHPPQ YAPYSQPPPP GSVNPQTAAA PLPHQPEEAA PYGPPAQSYP
401: PNVRPPSPYM PPPSGPVPPF YGPNPGMYEP PAVRPNSGPP PPYNAGYKQQ GGGGGFPEQY GYSGSPSHRG NAGMNSPSPF APTGASSAGS GNYGKLPTAQ
501: ILPQAAPVSS TPSASSGSRV AVDDVVDKVS TMGFSKEQVR ATVRRLTENG QNVDLNVVLD KLMNDTDAQP AQRGWFGR
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.