Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023474.1-P | Field mustard | nucleus | 88.09 | 80.04 |
| CDX91045 | Canola | nucleus | 79.67 | 79.84 |
| AT5G14540.1 | Thale cress | nucleus | 57.91 | 51.55 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 47.02 | 40.67 |
| KRG93222 | Soybean | nucleus | 44.56 | 37.54 |
| Solyc02g086520.2.1 | Tomato | nucleus | 41.27 | 36.88 |
| PGSC0003DMT400032802 | Potato | nucleus | 41.07 | 36.83 |
| KRH56551 | Soybean | nucleus | 43.33 | 36.82 |
| Solyc12g035240.1.1 | Tomato | nucleus | 33.88 | 33.47 |
| Zm00001d008708_P001 | Maize | extracellular | 37.58 | 32.5 |
| Os01t0169900-01 | Rice | plasma membrane | 38.6 | 32.41 |
| Zm00001d039686_P001 | Maize | nucleus | 37.78 | 32.39 |
| PGSC0003DMT400072130 | Potato | nucleus | 34.29 | 32.12 |
| Os05t0169400-01 | Rice | plastid | 34.91 | 31.72 |
| TraesCS1A01G113700.1 | Wheat | nucleus | 37.37 | 31.71 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 37.37 | 31.49 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 36.76 | 31.35 |
| KXG31759 | Sorghum | nucleus | 37.58 | 31.12 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 34.29 | 31.04 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 36.55 | 31.01 |
| EES19114 | Sorghum | nucleus | 36.96 | 30.93 |
| TraesCS3D01G093200.1 | Wheat | nucleus | 35.93 | 29.71 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 36.76 | 29.68 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 36.14 | 29.19 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 34.7 | 28.4 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 32.03 | 28.36 |
| CDY67879 | Canola | nucleus | 22.59 | 23.01 |
| CDX89188 | Canola | nucleus | 21.77 | 22.55 |
| CDX97433 | Canola | nucleus | 22.38 | 22.15 |
| CDY29896 | Canola | nucleus | 21.97 | 21.97 |
| CDY25250 | Canola | nucleus | 22.18 | 21.95 |
| CDY14248 | Canola | nucleus | 21.97 | 21.79 |
| CDY18985 | Canola | nucleus | 20.94 | 21.29 |
Protein Annotations
| EnsemblPlants:CDX85594 | EnsemblPlantsGene:GSBRNA2T00143317001 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF2 |
| PFAM:PF07223 | ProteinID:CDX85594 | ProteinID:CDX85594.1 | SEG:seg | UniParc:UPI0004EE2F14 | MapMan:35.2 |
Description
BnaA02g02190D
Coordinates
chrLK031842:+:814167..816421
Molecular Weight (calculated)
52338.8 Da
IEP (calculated)
5.443
GRAVY (calculated)
-0.772
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTTRFSDKQ IMDLMNDTNS NDGDHQRSRV DDTNDLVPKK EAIVPSYDFQ PIRPNTTVGL SHSALDLAGS VNSTPAARGF AASDFYPVKS SARSYGSVDS
101: IEPSKLFAEK ERVNPETAIL SEIDRVMKKH ADDLMNVMEG VSARLTQLES RTRNLENLVD DVKVSVGNSH GNTDGKMRQL ENIMLEVQSG VQLLKDKQEI
201: LEAQLQLSKL QVSKVDQRSD KHSTHVEPTA QPPAALPQPP ASAAAPPSLT QQGLPPQQFI QQHSLQAPSS QLPQLPSQFP PQQDEQSSLS TSSTSSNPLQ
301: QPSSGYNPEE PPYPYSSNPP RQQPPPAPAP SQQYYNNPPT PPSMYDGPGG RSSSGFPSGY SPEPYPYTTP PSSQFGNSQS MKPSHQSGGG GGGSGYPQIP
401: MARPLPQALP MATAISSGGS GGGGSVDDVI DKVSSMGFPR DQVRGTVRAL TENGQAVDLN TVLDKLMNGG VMQQQQQQPP RGWFGGR
101: IEPSKLFAEK ERVNPETAIL SEIDRVMKKH ADDLMNVMEG VSARLTQLES RTRNLENLVD DVKVSVGNSH GNTDGKMRQL ENIMLEVQSG VQLLKDKQEI
201: LEAQLQLSKL QVSKVDQRSD KHSTHVEPTA QPPAALPQPP ASAAAPPSLT QQGLPPQQFI QQHSLQAPSS QLPQLPSQFP PQQDEQSSLS TSSTSSNPLQ
301: QPSSGYNPEE PPYPYSSNPP RQQPPPAPAP SQQYYNNPPT PPSMYDGPGG RSSSGFPSGY SPEPYPYTTP PSSQFGNSQS MKPSHQSGGG GGGSGYPQIP
401: MARPLPQALP MATAISSGGS GGGGSVDDVI DKVSSMGFPR DQVRGTVRAL TENGQAVDLN TVLDKLMNGG VMQQQQQQPP RGWFGGR
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.