Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91045 | Canola | nucleus | 52.1 | 58.64 |
| CDX85594 | Canola | nucleus | 51.55 | 57.91 |
| AT3G01560.1 | Thale cress | nucleus | 50.09 | 53.62 |
| Bra023474.1-P | Field mustard | nucleus | 52.1 | 53.17 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 42.41 | 41.21 |
| Solyc02g086520.2.1 | Tomato | nucleus | 38.39 | 38.53 |
| PGSC0003DMT400032802 | Potato | nucleus | 37.29 | 37.57 |
| KRG93222 | Soybean | nucleus | 39.49 | 37.37 |
| KRH56551 | Soybean | nucleus | 38.94 | 37.17 |
| Os05t0169400-01 | Rice | plastid | 35.28 | 36.01 |
| Os01t0169900-01 | Rice | plasma membrane | 37.29 | 35.17 |
| Zm00001d039686_P001 | Maize | nucleus | 36.2 | 34.86 |
| PGSC0003DMT400072130 | Potato | nucleus | 33.09 | 34.81 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 36.38 | 34.67 |
| Zm00001d008708_P001 | Maize | extracellular | 35.65 | 34.64 |
| TraesCS1A01G113700.1 | Wheat | nucleus | 36.2 | 34.49 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 36.38 | 34.43 |
| Solyc12g035240.1.1 | Tomato | nucleus | 30.9 | 34.28 |
| KXG31759 | Sorghum | nucleus | 36.75 | 34.18 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 35.65 | 34.15 |
| EES19114 | Sorghum | nucleus | 35.83 | 33.68 |
| TraesCS3D01G093200.1 | Wheat | nucleus | 34.92 | 32.43 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 35.65 | 32.34 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 34.92 | 32.1 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 35.28 | 32.01 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 31.44 | 31.97 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 29.62 | 29.45 |
| AT4G28300.1 | Thale cress | nucleus | 21.57 | 23.79 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831305 | ProteinID:AED92045.1 | EMBL:AK317556 | ArrayExpress:AT5G14540 | EnsemblPlantsGene:AT5G14540 |
| RefSeq:AT5G14540 | TAIR:AT5G14540 | RefSeq:AT5G14540-TAIR-G | EnsemblPlants:AT5G14540.1 | TAIR:AT5G14540.1 | UniProt:B9DHK3 |
| ncoils:Coil | InterPro:DUF1421 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | InterPro:IPR015940 | RefSeq:NP_196958.2 | PFAM:PF07223 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50030 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF2 | InterPro:UBA | UniParc:UPI000034F210 |
| SEG:seg | : | : | : | : | : |
Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
Coordinates
chr5:-:4687069..4689923
Molecular Weight (calculated)
59100.8 Da
IEP (calculated)
6.326
GRAVY (calculated)
-0.870
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.