Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032802 | Potato | nucleus | 72.11 | 72.38 |
| Solyc12g035240.1.1 | Tomato | nucleus | 45.14 | 49.9 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 49.17 | 47.6 |
| KRH56551 | Soybean | nucleus | 45.69 | 43.46 |
| KRG93222 | Soybean | nucleus | 46.05 | 43.43 |
| CDX85594 | Canola | nucleus | 36.88 | 41.27 |
| CDX91045 | Canola | nucleus | 35.96 | 40.33 |
| AT3G01560.1 | Thale cress | nucleus | 37.8 | 40.31 |
| Bra023474.1-P | Field mustard | nucleus | 38.9 | 39.55 |
| AT5G14540.1 | Thale cress | nucleus | 38.53 | 38.39 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 38.72 | 38.36 |
| TraesCS1A01G113700.1 | Wheat | nucleus | 40.18 | 38.15 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 39.63 | 37.63 |
| EES19114 | Sorghum | nucleus | 40.18 | 37.63 |
| Os01t0169900-01 | Rice | plasma membrane | 40.0 | 37.59 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 37.06 | 37.55 |
| Os05t0169400-01 | Rice | plastid | 36.88 | 37.5 |
| Zm00001d008708_P001 | Maize | extracellular | 38.53 | 37.3 |
| Zm00001d039686_P001 | Maize | nucleus | 38.72 | 37.15 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 39.27 | 37.02 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 38.72 | 36.95 |
| KXG31759 | Sorghum | nucleus | 39.45 | 36.56 |
| TraesCS3D01G093200.1 | Wheat | nucleus | 37.43 | 34.63 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 38.17 | 34.49 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 37.98 | 34.33 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 37.06 | 33.95 |
| Solyc10g008340.2.1 | Tomato | extracellular | 22.94 | 22.94 |
| Solyc07g053990.2.1 | Tomato | nucleus | 20.37 | 22.29 |
Protein Annotations
| EnsemblPlants:Solyc02g086520.2.1 | EnsemblPlantsGene:Solyc02g086520.2 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF2 |
| PFAM:PF07223 | SEG:seg | UniParc:UPI0002767981 | UniProt:K4BBG0 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr2:-:49190244..49195237
Molecular Weight (calculated)
59370.8 Da
IEP (calculated)
6.428
GRAVY (calculated)
-0.868
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSQYMDKQ IMDLSNSQNS NNNSDFIDLV NPQADRHISG DDQKKEDIVP SYEFHPIRPI GSSSPKSNID SSNVGVARAW NSADSKNNAE SYIRNYGSLD
101: TIGPTKVILE KDLGSVYSSQ LSEIDHTVKK YADNLLHAVE GVSARLSQLE TRNRQIDNSI DELKLSVGNN HGVTDGKLRQ LENILREVQD GVQVIRDKQE
201: IMDAQLQLMK SQAPKIEQQA ETHSTTHTDS SQPTTAPLHS HQQFPPVALT QQPSTLAPPP PQQNLPYQVQ LQNQFPHNPI PSHPQPEAYY PPAGQAPENL
301: GHQYQSPVAQ QHQPSPPPPH QQHQSTPQPI YSQPPPPAQP HLPHPSQPQP QPLVGHHREE TPFVPSQTYP PPSIRQPPHS SSGAPPSQQL YGTPPNIFEP
401: PSSRPGPGYS GVYGPSSMPG DPYPYSSSPG QYGSGSSMKP PQVSLPSMGQ SGSSGYQQLP TARILPQALP TASAVSGGSS SPGSGNRVPI DDVVDKVTNM
501: GFPRDQVRAT VRRLTESGQT VDLNTVLDKL MNDGEVQPPR GWLGR
101: TIGPTKVILE KDLGSVYSSQ LSEIDHTVKK YADNLLHAVE GVSARLSQLE TRNRQIDNSI DELKLSVGNN HGVTDGKLRQ LENILREVQD GVQVIRDKQE
201: IMDAQLQLMK SQAPKIEQQA ETHSTTHTDS SQPTTAPLHS HQQFPPVALT QQPSTLAPPP PQQNLPYQVQ LQNQFPHNPI PSHPQPEAYY PPAGQAPENL
301: GHQYQSPVAQ QHQPSPPPPH QQHQSTPQPI YSQPPPPAQP HLPHPSQPQP QPLVGHHREE TPFVPSQTYP PPSIRQPPHS SSGAPPSQQL YGTPPNIFEP
401: PSSRPGPGYS GVYGPSSMPG DPYPYSSSPG QYGSGSSMKP PQVSLPSMGQ SGSSGYQQLP TARILPQALP TASAVSGGSS SPGSGNRVPI DDVVDKVTNM
501: GFPRDQVRAT VRRLTESGQT VDLNTVLDKL MNDGEVQPPR GWLGR
001: MNTCQFMDKQ IMDLSSSSSL PSTDFIDLMN NHDGDDHQKK QVIGDNGLDS KKEVIVPSYD FHPIRPTTAA RLSHSALDLA GSTTRVNWSA SDYKPVSTTS
101: PNTNFGSLDS IEPSKLVPDK GQNVFNTTIM SEIIDRTMKK HTDTLLHVME GVSARLSQLE TRTHNLENLV DDLKVSVDNS HGSTDGKMRQ LKNILVEVQS
201: GVQLLKDKQE ILEAQLSKHQ VSNQHAKTHS LHVDPTAQSP APVPMQQFPL TSFPQPPSST AAPSQPPSSQ LPPQLPTQFS SQQEPYCPPP SHPQPPPSNP
301: PPYQAPQTQT PHQPSYQSPP QQPQYPQQPP PSSGYNPEEQ PPYQMQSYPP NPPRQQPPAG STPSQQFYNP PQPQPSMYDG AGGRSNSGFP SGYLSEPYTY
401: SGSPMSSAKP PHISSNGTGY PQLSNSRPLP HALPMVSAVS SGGGSSSPRS ESRAPIDDVI DRVTTMGFPR DQVRATVRKL TENGQAVDLN VVLDKLMNEG
501: GAPPGGFFGG R
101: PNTNFGSLDS IEPSKLVPDK GQNVFNTTIM SEIIDRTMKK HTDTLLHVME GVSARLSQLE TRTHNLENLV DDLKVSVDNS HGSTDGKMRQ LKNILVEVQS
201: GVQLLKDKQE ILEAQLSKHQ VSNQHAKTHS LHVDPTAQSP APVPMQQFPL TSFPQPPSST AAPSQPPSSQ LPPQLPTQFS SQQEPYCPPP SHPQPPPSNP
301: PPYQAPQTQT PHQPSYQSPP QQPQYPQQPP PSSGYNPEEQ PPYQMQSYPP NPPRQQPPAG STPSQQFYNP PQPQPSMYDG AGGRSNSGFP SGYLSEPYTY
401: SGSPMSSAKP PHISSNGTGY PQLSNSRPLP HALPMVSAVS SGGGSSSPRS ESRAPIDDVI DRVTTMGFPR DQVRATVRKL TENGQAVDLN VVLDKLMNEG
501: GAPPGGFFGG R
Arabidopsis Description
Proline-rich receptor-like kinase, putative (DUF1421) [Source:UniProtKB/TrEMBL;Acc:F4J3J5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.