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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 extracellular: 22364583
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g038790.1.1
Solyc02g084080.1.1
Solyc02g084110.1.1
Solyc02g084160.1.1
Solyc02g084200.1.1
Solyc04g056280.2.1
Solyc06g051780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G28300.1 Solyc06g051780.2.1 AT2G39740.1 21798944
AT4G28300.1 Solyc02g038790.1.1 AT3G51180.1 21798944
AT4G28300.1 Solyc02g084080.1.1 AT3G51180.1 21798944
AT4G28300.1 Solyc02g084110.1.1 AT3G51180.1 21798944
AT4G28300.1 Solyc02g084160.1.1 AT3G51180.1 21798944
AT4G28300.1 Solyc02g084200.1.1 AT3G51180.1 21798944
AT4G28300.1 Solyc04g056280.2.1 AT5G10270.1 21798944
AT4G28300.1 Solyc04g056280.2.1 AT5G64960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400034191 Potato nucleus 89.72 89.23
Solyc07g053990.2.1 Tomato nucleus 69.72 76.31
VIT_12s0028g03740.t01 Wine grape nucleus 20.0 72.19
KRH55962 Soybean nucleus 24.22 64.71
AT4G28300.1 Thale cress nucleus 48.07 52.82
KRH25575 Soybean nucleus 51.19 52.25
Bra026268.1-P Field mustard nucleus 44.04 50.42
CDX89188 Canola nucleus 43.12 50.0
CDY18985 Canola nucleus 43.67 49.69
CDX97433 Canola nucleus 43.85 48.58
CDY25250 Canola nucleus 43.85 48.58
VIT_12s0028g03730.t01 Wine grape nucleus 31.19 48.57
CDY67879 Canola nucleus 42.57 48.54
CDY29896 Canola nucleus 43.12 48.25
Bra024211.1-P Field mustard nucleus 43.12 48.25
CDY14248 Canola nucleus 43.12 47.86
Bra010376.1-P Field mustard nucleus 42.57 47.25
KRH26948 Soybean nucleus 45.14 46.24
KRH55961 Soybean cytosol 22.2 44.32
KRH22387 Soybean nucleus 43.3 43.95
GSMUA_Achr4P07980_001 Banana nucleus 33.03 37.74
Os01t0754500-01 Rice nucleus 38.35 35.19
Zm00001d012728_P001 Maize nucleus 37.61 35.1
EES03625 Sorghum nucleus 37.25 34.58
GSMUA_Achr4P15050_001 Banana nucleus 30.46 33.54
HORVU3Hr1G072520.1 Barley nucleus 35.78 32.34
TraesCS3D01G292600.1 Wheat nucleus 35.6 32.01
TraesCS3A01G292800.1 Wheat nucleus 35.6 32.01
TraesCS3B01G327600.1 Wheat nucleus 34.86 31.51
Os05t0561600-01 Rice plastid 27.16 28.57
TraesCS1D01G402000.1 Wheat nucleus 26.79 27.5
TraesCS1A01G394400.1 Wheat nucleus 26.42 27.22
HORVU1Hr1G086930.4 Barley nucleus 26.42 27.12
OQU78421 Sorghum plastid 24.59 25.82
Zm00001d038998_P001 Maize plastid 24.4 25.38
TraesCS1B01G422400.1 Wheat nucleus 24.59 25.38
Zm00001d009555_P003 Maize endoplasmic reticulum, vacuole 23.49 24.52
Os01t0672800-01 Rice cytosol, nucleus 20.37 24.4
TraesCS3B01G305700.1 Wheat plastid 22.57 22.95
Solyc02g086520.2.1 Tomato nucleus 22.94 22.94
Zm00001d043906_P002 Maize nucleus 22.75 22.59
TraesCS3D01G271600.1 Wheat plastid 22.2 22.57
TraesCS3A01G272000.1 Wheat plastid 22.02 22.56
EES03419 Sorghum nucleus 22.2 22.49
Solyc12g035240.1.1 Tomato nucleus 19.45 21.5
Zm00001d011562_P003 Maize plastid 21.83 20.59
Protein Annotations
EnsemblPlants:Solyc10g008340.2.1EnsemblPlantsGene:Solyc10g008340.2InterPro:DUF1421ncoils:CoilPANTHER:PTHR31805PANTHER:PTHR31805:SF3
PFAM:PF07223SEG:segUniParc:UPI000276B7B5UniProt:K4CY11MapMan:35.2:
Description
No Description!
Coordinates
chr10:-:2468971..2473546
Molecular Weight (calculated)
59890.3 Da
IEP (calculated)
6.458
GRAVY (calculated)
-0.927
Length
545 amino acids
Sequence
(BLAST)
001: MASGSSGRPS NSSGSKGFDF GSDDILCSYE DYPHQDASNG TLSDPAIATS SAKEFHKNRM TRSSMFPTST YSPPEESSFN QDMICTVEKT MKKYTDNLMR
101: FLEGISSRLS QLELYCYNLD KSIGEMRSDL VRDHGEADLK LKALEKHVQE VHRSVQILRD KQELAETQKE LAKLQFAPKE PASANNSQQN EDRNAQPVSD
201: SNKGDNSTDV NGQQLALALP HQVAPRAPLT NQPVEQPQQA PPPPIPSQSM TQSQGYYLPP VQMSNPPAPT HLSQGQYLSS DPQYRTSQMQ DLSRLPPQPA
301: APPGNQTPQI QSMPQYQQQQ WAQQVPQQVQ ASQQHQLPSV QQQARPSSPA VYPSYPPSQP NSSPEPVPNS MPMQVSFSTI PQSVSSRPEA IPYGYDRSGR
401: PLQSQPPTQH LKPSFGAPGD GYAASGPHPS LSAGNAYLMY DSEGPRGHPP QPPNFPQSGY PPSSFPPQNA QSSPSPNHMF RPPQLMRTHP YNELIEKLAS
501: MGYRGDHVVN VIQRLEESGQ TVDFNTVLDR LNGHSSGGPQ RGWSG
Best Arabidopsis Sequence Match ( AT4G28300.1 )
(BLAST)
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.