Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026268.1-P | Field mustard | nucleus | 77.62 | 80.88 |
| CDX89188 | Canola | nucleus | 76.41 | 80.64 |
| CDY14248 | Canola | nucleus | 79.03 | 79.84 |
| Bra010376.1-P | Field mustard | nucleus | 78.63 | 79.43 |
| CDY18985 | Canola | nucleus | 76.41 | 79.12 |
| CDY25250 | Canola | nucleus | 78.23 | 78.86 |
| CDX97433 | Canola | nucleus | 77.82 | 78.46 |
| Bra024211.1-P | Field mustard | nucleus | 75.4 | 76.8 |
| CDY29896 | Canola | nucleus | 75.4 | 76.8 |
| CDY67879 | Canola | nucleus | 73.59 | 76.36 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 20.36 | 66.89 |
| KRH55962 | Soybean | nucleus | 27.42 | 66.67 |
| Solyc07g053990.2.1 | Tomato | nucleus | 51.81 | 51.61 |
| PGSC0003DMT400047245 | Potato | nucleus | 53.02 | 48.98 |
| KRH25575 | Soybean | nucleus | 52.22 | 48.5 |
| Solyc10g008340.2.1 | Tomato | extracellular | 52.82 | 48.07 |
| PGSC0003DMT400034191 | Potato | nucleus | 52.82 | 47.81 |
| KRH26948 | Soybean | nucleus | 45.56 | 42.48 |
| KRH22387 | Soybean | nucleus | 44.96 | 41.53 |
| KRH55961 | Soybean | cytosol | 21.17 | 38.46 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 35.08 | 36.48 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 24.8 | 35.14 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 33.27 | 33.33 |
| Zm00001d012728_P001 | Maize | nucleus | 38.51 | 32.71 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 39.11 | 32.17 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 38.91 | 31.85 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 38.71 | 31.68 |
| Os01t0754500-01 | Rice | nucleus | 37.9 | 31.65 |
| EES03625 | Sorghum | nucleus | 37.3 | 31.52 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 38.31 | 31.51 |
| Os05t0561600-01 | Rice | plastid | 25.81 | 24.71 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 25.81 | 24.2 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 25.6 | 23.92 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 25.4 | 23.73 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 25.0 | 23.48 |
| OQU78421 | Sorghum | plastid | 23.59 | 22.54 |
| Zm00001d038998_P001 | Maize | plastid | 23.39 | 22.14 |
| EES03419 | Sorghum | nucleus | 23.99 | 22.12 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.79 | 22.01 |
| TraesCS3D01G271600.1 | Wheat | plastid | 23.79 | 22.01 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 22.98 | 21.84 |
| TraesCS3A01G272000.1 | Wheat | plastid | 23.19 | 21.62 |
| AT5G14540.1 | Thale cress | nucleus | 23.79 | 21.57 |
| Zm00001d043906_P002 | Maize | nucleus | 23.79 | 21.49 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 19.56 | 21.32 |
| AT3G01560.1 | Thale cress | nucleus | 21.57 | 20.94 |
| Zm00001d011562_P003 | Maize | plastid | 22.98 | 19.72 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828945 | ProteinID:AEE85466.1 | ProteinID:AEE85467.1 | ArrayExpress:AT4G28300 | EnsemblPlantsGene:AT4G28300 |
| RefSeq:AT4G28300 | TAIR:AT4G28300 | RefSeq:AT4G28300-TAIR-G | EnsemblPlants:AT4G28300.1 | TAIR:AT4G28300.1 | EMBL:AY063895 |
| EMBL:AY096387 | Unigene:At.24043 | ncoils:Coil | InterPro:DUF1421 | GO:GO:0003674 | GO:GO:0008150 |
| RefSeq:NP_194559.2 | RefSeq:NP_974630.1 | PFAM:PF07223 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 | UniProt:Q8VZR8 |
| UniParc:UPI00000AAB26 | SEG:seg | : | : | : | : |
Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
Coordinates
chr4:+:14014646..14017097
Molecular Weight (calculated)
54109.7 Da
IEP (calculated)
6.231
GRAVY (calculated)
-0.945
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.