Factsheet for Solyc07g053990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g038790.1.1
Solyc02g084080.1.1
Solyc02g084110.1.1
Solyc02g084160.1.1
Solyc02g084200.1.1
Solyc04g056280.2.1
Solyc06g051780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	Solyc06g051780.2.1	AT2G39740.1	21798944
AT4G28300.1	Solyc02g038790.1.1	AT3G51180.1	21798944
AT4G28300.1	Solyc02g084080.1.1	AT3G51180.1	21798944
AT4G28300.1	Solyc02g084110.1.1	AT3G51180.1	21798944
AT4G28300.1	Solyc02g084160.1.1	AT3G51180.1	21798944
AT4G28300.1	Solyc02g084200.1.1	AT3G51180.1	21798944
AT4G28300.1	Solyc04g056280.2.1	AT5G10270.1	21798944
AT4G28300.1	Solyc04g056280.2.1	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047245	Potato	nucleus	93.37	86.59
VIT_12s0028g03740.t01	Wine grape	nucleus	21.89	72.19
Solyc10g008340.2.1	Tomato	extracellular	76.31	69.72
KRH55962	Soybean	nucleus	28.51	69.61
KRH25575	Soybean	nucleus	57.83	53.93
AT4G28300.1	Thale cress	nucleus	51.61	51.81
Bra026268.1-P	Field mustard	nucleus	47.19	49.37
CDY18985	Canola	nucleus	47.19	49.06
CDY67879	Canola	nucleus	46.79	48.74
CDX89188	Canola	nucleus	45.98	48.72
KRH55961	Soybean	cytosol	26.71	48.72
CDX97433	Canola	nucleus	47.99	48.58
CDY25250	Canola	nucleus	47.99	48.58
CDY29896	Canola	nucleus	47.39	48.46
Bra024211.1-P	Field mustard	nucleus	47.39	48.46
CDY14248	Canola	nucleus	47.19	47.86
Bra010376.1-P	Field mustard	nucleus	46.79	47.45
VIT_12s0028g03730.t01	Wine grape	nucleus	33.13	47.14
KRH26948	Soybean	nucleus	49.4	46.24
KRH22387	Soybean	nucleus	47.19	43.76
GSMUA_Achr4P07980_001	Banana	nucleus	34.54	36.06
EES03625	Sorghum	nucleus	39.36	33.39
GSMUA_Achr4P15050_001	Banana	nucleus	32.93	33.13
Zm00001d012728_P001	Maize	nucleus	38.55	32.88
Os01t0754500-01	Rice	nucleus	39.16	32.83
HORVU3Hr1G072520.1	Barley	nucleus	37.95	31.34
TraesCS3D01G292600.1	Wheat	nucleus	37.75	31.02
TraesCS3A01G292800.1	Wheat	nucleus	37.55	30.86
TraesCS3B01G327600.1	Wheat	nucleus	37.35	30.85
Os05t0561600-01	Rice	plastid	27.11	26.06
TraesCS1A01G394400.1	Wheat	nucleus	25.7	24.2
HORVU1Hr1G086930.4	Barley	nucleus	25.7	24.11
OQU78421	Sorghum	plastid	24.9	23.89
TraesCS1D01G402000.1	Wheat	nucleus	25.3	23.73
TraesCS1B01G422400.1	Wheat	nucleus	25.1	23.67
Zm00001d038998_P001	Maize	plastid	24.7	23.47
Zm00001d009555_P003	Maize	endoplasmic reticulum, vacuole	24.3	23.18
Os01t0672800-01	Rice	cytosol, nucleus	20.68	22.64
Zm00001d043906_P002	Maize	nucleus	22.49	20.4
Solyc02g086520.2.1	Tomato	nucleus	22.29	20.37
TraesCS3D01G271600.1	Wheat	plastid	21.89	20.34
EES03419	Sorghum	nucleus	21.89	20.26
TraesCS3B01G305700.1	Wheat	plastid	21.69	20.15
TraesCS3A01G272000.1	Wheat	plastid	21.49	20.11
Solyc12g035240.1.1	Tomato	nucleus	18.47	18.66
Zm00001d011562_P003	Maize	plastid	21.29	18.34

Protein Annotations

EnsemblPlants:Solyc07g053990.2.1	EnsemblPlantsGene:Solyc07g053990.2	InterPro:DUF1421	ncoils:Coil	PANTHER:PTHR31805	PANTHER:PTHR31805:SF3
PFAM:PF07223	SEG:seg	UniParc:UPI000276C209	UniProt:K4CFU4	MapMan:35.2	:

Description

No Description!

Coordinates

chr7:-:62402134..62406077

Molecular Weight (calculated)

55135.1 Da

IEP (calculated)

6.568

GRAVY (calculated)

-0.919

Length

498 amino acids

Sequence
(BLAST)

001: MASGSSGRSN NAGSKGFDFA SDDILCSYED YANQDPSNGT HSDSVIAANS AKEFHKSRMT RSSMFPAPAY SPPEESSFNQ DMICTIEKTM KKYTDNLMRF
101: LEGISSRLSQ LELYCYNLDK SIGEMRSDLV RDHGEADSKL KALEKHVQEV HRSVQILRDK QELAETQKEL AKLQLAQKGS TSSSNSQQNE ERSAQHLSDD
201: KKSDDAPEVH GQQLALALPH QVAPQMANQQ APTQLSQGQF LSSDPQYRNP QMQVTPQRAA PQVNQTQQLQ SMPQYQQQWA QQVPQQVQQS QIPNMQQQAR
301: PASPAVYPSY LHSQPNPTPE TMPNSMPMQV PFSGVSQPVA SRPESMPYGY DRSGRPLQQQ PATPHLKPSF GAPGDGYAAS GAHPTLSPGN AYVMYDGEGT
401: RAHPPPQPNF QQSGYPPSSF PPQNQQPAPS PNLMVRPPQQ VRNHPYNELI EKLVSMGYRG DHVVNVIQRL EESGQPVDFN AILDRMNGHS SGGPQRGW

Best Arabidopsis Sequence Match ( AT4G28300.1 )
(BLAST)

001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW

Arabidopsis Description

Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.