Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G394400.1 | Wheat | nucleus | 84.28 | 84.12 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 83.71 | 83.24 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 78.6 | 78.15 |
| Os05t0561600-01 | Rice | plastid | 65.53 | 66.8 |
| OQU78421 | Sorghum | plastid | 59.47 | 60.5 |
| Zm00001d038998_P001 | Maize | plastid | 56.44 | 56.87 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 51.33 | 51.92 |
| TraesCS3B01G305700.1 | Wheat | plastid | 40.53 | 39.93 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 9.85 | 34.44 |
| KRH55962 | Soybean | nucleus | 13.07 | 33.82 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 27.84 | 30.82 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 25.57 | 27.27 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 30.49 | 26.7 |
| CDY18985 | Canola | nucleus | 23.48 | 25.89 |
| CDX89188 | Canola | nucleus | 22.73 | 25.53 |
| Bra026268.1-P | Field mustard | nucleus | 22.73 | 25.21 |
| Solyc07g053990.2.1 | Tomato | nucleus | 23.67 | 25.1 |
| AT4G28300.1 | Thale cress | nucleus | 23.48 | 25.0 |
| CDX97433 | Canola | nucleus | 23.11 | 24.8 |
| CDY25250 | Canola | nucleus | 22.92 | 24.59 |
| Solyc10g008340.2.1 | Tomato | extracellular | 25.38 | 24.59 |
| CDY14248 | Canola | nucleus | 22.73 | 24.44 |
| PGSC0003DMT400034191 | Potato | nucleus | 25.19 | 24.27 |
| Bra010376.1-P | Field mustard | nucleus | 22.54 | 24.24 |
| KRH25575 | Soybean | nucleus | 24.43 | 24.16 |
| KRH26948 | Soybean | nucleus | 24.24 | 24.06 |
| CDY67879 | Canola | nucleus | 21.78 | 24.06 |
| KRH22387 | Soybean | nucleus | 24.43 | 24.02 |
| PGSC0003DMT400047245 | Potato | nucleus | 24.05 | 23.65 |
| CDY29896 | Canola | nucleus | 21.59 | 23.41 |
| Bra024211.1-P | Field mustard | nucleus | 21.59 | 23.41 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 13.83 | 20.86 |
| KRH55961 | Soybean | cytosol | 9.85 | 19.05 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 17.42 | 15.92 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 16.86 | 14.76 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G422400.1 | EnsemblPlantsGene:TraesCS1B01G422400 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF4 |
| PFAM:PF07223 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:645511135..645514305
Molecular Weight (calculated)
58338.3 Da
IEP (calculated)
6.580
GRAVY (calculated)
-0.651
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPARPASV SGPFGLAPDL ARCSFDHTLR REDFQDNRLL RSLVSMRDQE NHSKEIITEA IESCMNKQAE NLVNSLDVIS GRLSQLELYC YKLERSIGEL
101: RSDVMDYHSE ANLNFRGLDK NVKEVQKCVQ VLQDKQEIAE TQNELAKLQI VYEDAAQKSE GTAPSVFMAK ENDGSFPGAK HELALVPLHQ VNAAQSPAMQ
201: FQSCNGLILQ QLVPVSFSNQ QDQPRSNQPT VYCMQNQGQP ERRQAQTFQP APHSMQPQAQ NPQPQTVVEA PEFYLQAQHH WQHQTVQDVH SQARQPQQQP
301: QPQPQVAQQQ QYHNMQQVPA QVVQLQTSSP QAQSAPHVAL FYPPYGSQQP ACGNTEALSR GMVVQPAYST ISSSQRKHHE AAPVYVQSSA IAVPMAEHHI
401: QHQQTQQFQS PGNGSFAPQQ CKVGPYSVQG GAQAYNTVYG SPPNSAATFV AVLPQQAQQA SAPMMLHHLG PQPVQNHPAD MADKAARMGY LNDHAENMPR
501: RMVAAGQPVE YNAFHDGLSS VGNAAWSG
101: RSDVMDYHSE ANLNFRGLDK NVKEVQKCVQ VLQDKQEIAE TQNELAKLQI VYEDAAQKSE GTAPSVFMAK ENDGSFPGAK HELALVPLHQ VNAAQSPAMQ
201: FQSCNGLILQ QLVPVSFSNQ QDQPRSNQPT VYCMQNQGQP ERRQAQTFQP APHSMQPQAQ NPQPQTVVEA PEFYLQAQHH WQHQTVQDVH SQARQPQQQP
301: QPQPQVAQQQ QYHNMQQVPA QVVQLQTSSP QAQSAPHVAL FYPPYGSQQP ACGNTEALSR GMVVQPAYST ISSSQRKHHE AAPVYVQSSA IAVPMAEHHI
401: QHQQTQQFQS PGNGSFAPQQ CKVGPYSVQG GAQAYNTVYG SPPNSAATFV AVLPQQAQQA SAPMMLHHLG PQPVQNHPAD MADKAARMGY LNDHAENMPR
501: RMVAAGQPVE YNAFHDGLSS VGNAAWSG
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.