Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G238200.1 | Wheat | nucleus | 94.77 | 95.39 |
| HORVU6Hr1G053590.1 | Barley | mitochondrion | 86.27 | 62.86 |
| Zm00001d017086_P001 | Maize | cytosol | 52.94 | 50.62 |
| Os02t0595200-00 | Rice | nucleus | 52.29 | 45.71 |
| KXG30545 | Sorghum | nucleus | 52.94 | 42.41 |
| KRH57138 | Soybean | nucleus | 35.95 | 38.19 |
| KRH03218 | Soybean | nucleus | 35.29 | 36.49 |
| PGSC0003DMT400046830 | Potato | nucleus | 30.72 | 33.33 |
| AT4G24700.1 | Thale cress | nucleus | 30.72 | 32.87 |
| Bra013826.1-P | Field mustard | nucleus | 29.41 | 32.85 |
| CDY11030 | Canola | nucleus | 26.14 | 28.57 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G192700.1 | EnsemblPlantsGene:TraesCS6D01G192700 | PANTHER:PTHR34665 | PANTHER:PTHR34665:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6D:+:266783327..266783788
Molecular Weight (calculated)
16705.3 Da
IEP (calculated)
11.003
GRAVY (calculated)
-0.790
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSADNVDI ELVKAVAQAW YAHSGNPRPS RAPADDDDGA GLGARRVGAP RYRPSRFKLE AAAAAAAAAK PPNSRPWDFT QSLWDTYELV TVAQKIESSL
101: AIVDEATARP PRRAFTNEDA TRGGGGKRAR ESRRSLRSLF RRSSSRRFED SSS
101: AIVDEATARP PRRAFTNEDA TRGGGGKRAR ESRRSLRSLF RRSSSRRFED SSS
001: MRKKREAKDE NEEEEEEKKK RLELMKAAAQ AWLSHSQTSK HTVLEFDAQR KHAFVKGKAS RFKTEALSAK HHPSFLDWEF GQSLWDPYEI LSVSKKLERE
101: LTLEEQTFSS SDNDGLKKMK KKKTRDSRNS LRSLFTRSSS KRF
101: LTLEEQTFSS SDNDGLKKMK KKKTRDSRNS LRSLFTRSSS KRF
Arabidopsis Description
Uncharacterized protein At4g24700 [Source:UniProtKB/TrEMBL;Acc:Q9SB65]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.