Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU78421 | Sorghum | plastid | 81.3 | 82.08 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 71.95 | 72.22 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 59.73 | 58.95 |
| Os05t0561600-01 | Rice | plastid | 57.82 | 58.49 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 59.16 | 58.38 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 56.87 | 56.44 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 56.68 | 56.14 |
| Zm00001d043906_P002 | Maize | nucleus | 41.03 | 39.16 |
| Zm00001d011562_P003 | Maize | plastid | 39.89 | 36.16 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 10.11 | 35.1 |
| KRH55962 | Soybean | nucleus | 13.36 | 34.31 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 27.1 | 29.77 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 25.57 | 27.07 |
| Zm00001d012728_P001 | Maize | nucleus | 29.77 | 26.71 |
| KRH25575 | Soybean | nucleus | 25.95 | 25.47 |
| Solyc07g053990.2.1 | Tomato | nucleus | 23.47 | 24.7 |
| KRH26948 | Soybean | nucleus | 25.0 | 24.62 |
| Solyc10g008340.2.1 | Tomato | extracellular | 25.38 | 24.4 |
| CDY18985 | Canola | nucleus | 22.14 | 24.22 |
| KRH22387 | Soybean | nucleus | 24.81 | 24.21 |
| PGSC0003DMT400034191 | Potato | nucleus | 25.0 | 23.91 |
| CDX89188 | Canola | nucleus | 21.18 | 23.62 |
| AT4G28300.1 | Thale cress | nucleus | 22.14 | 23.39 |
| Bra026268.1-P | Field mustard | nucleus | 21.18 | 23.32 |
| CDY14248 | Canola | nucleus | 21.56 | 23.01 |
| PGSC0003DMT400047245 | Potato | nucleus | 23.47 | 22.91 |
| Bra010376.1-P | Field mustard | nucleus | 21.37 | 22.81 |
| CDY67879 | Canola | nucleus | 20.8 | 22.8 |
| CDX97433 | Canola | nucleus | 21.37 | 22.76 |
| CDY25250 | Canola | nucleus | 21.37 | 22.76 |
| CDY29896 | Canola | nucleus | 20.8 | 22.38 |
| Bra024211.1-P | Field mustard | nucleus | 20.8 | 22.38 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 14.5 | 21.71 |
| KRH55961 | Soybean | cytosol | 11.07 | 21.25 |
| Zm00001d008708_P001 | Maize | extracellular | 17.94 | 16.7 |
| Zm00001d039686_P001 | Maize | nucleus | 16.98 | 15.67 |
Protein Annotations
| EnsemblPlants:Zm00001d038998_P001 | EnsemblPlants:Zm00001d038998_T001 | EnsemblPlantsGene:Zm00001d038998 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 |
| PANTHER:PTHR31805:SF4 | PFAM:PF07223 | ProteinID:AQK88428.1 | SEG:seg | UniParc:UPI0008445D78 | UniProt:A0A1D6MCI3 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative DUF1421 domain family protein
Coordinates
chr6:+:168506016..168509750
Molecular Weight (calculated)
57896.1 Da
IEP (calculated)
7.398
GRAVY (calculated)
-0.564
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPARPAAA SVSAAFGLSP DPKRCSFDQA LRHKDFQENR LLMSFVNYHD QEKVSKEIVT DAIESCMKKQ ADNLLNSLEV ISGRLSQLEL YCYKLERSIG
101: ELRSDVMDYH NEANLNFQCL DKQLKEVQKS VQVVQERQEL AETQKEMTKL QIVHEDSAQK SERSAPSVFI NRENEIALVP LHQVNSVQSP AVQFQSCSGL
201: ILQQLVPVQD QQRSNQTAMY CMRGQSHLEH RQAQMFQAAA QPVQTHTTRK TQAHTVLEVP QVTTRQTPEF YAQPQHQWQH QTGQQLQSQV RQPQPQVVQQ
301: QQQYNNIQQG PAQMVQPQTS SPHAHSTPQI TLVYPPYGAH QSACGNAEAR TGSIVVPPSH STISSSQRKH HEAAPIYVQS NTVSVPLTEQ HQQLHSLGNG
401: SFVPQPSKVS PCGVASYTVQ GNAQAYSPAY GSPSSNPATI VAVLNQQAHC SAPMVLHHLG PSQSVQNHPI GIADKVARMG YPKDQVVDGL ALRMVDAGQP
501: AECNTLHDRL SSVTHAVAPQ AWSG
101: ELRSDVMDYH NEANLNFQCL DKQLKEVQKS VQVVQERQEL AETQKEMTKL QIVHEDSAQK SERSAPSVFI NRENEIALVP LHQVNSVQSP AVQFQSCSGL
201: ILQQLVPVQD QQRSNQTAMY CMRGQSHLEH RQAQMFQAAA QPVQTHTTRK TQAHTVLEVP QVTTRQTPEF YAQPQHQWQH QTGQQLQSQV RQPQPQVVQQ
301: QQQYNNIQQG PAQMVQPQTS SPHAHSTPQI TLVYPPYGAH QSACGNAEAR TGSIVVPPSH STISSSQRKH HEAAPIYVQS NTVSVPLTEQ HQQLHSLGNG
401: SFVPQPSKVS PCGVASYTVQ GNAQAYSPAY GSPSSNPATI VAVLNQQAHC SAPMVLHHLG PSQSVQNHPI GIADKVARMG YPKDQVVDGL ALRMVDAGQP
501: AECNTLHDRL SSVTHAVAPQ AWSG
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.