Factsheet for VIT_12s0028g03730.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03180.t01
VIT_07s0141g00280.t01
VIT_13s0019g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	VIT_13s0019g02230.t01	AT2G39740.1	21798944
AT4G28300.1	VIT_04s0023g03180.t01	AT3G51180.1	21798944
AT4G28300.1	VIT_07s0141g00280.t01	AT5G10270.1	21798944
AT4G28300.1	VIT_07s0141g00280.t01	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55961	Soybean	cytosol	40.29	51.65
Solyc07g053990.2.1	Tomato	nucleus	47.14	33.13
PGSC0003DMT400047245	Potato	nucleus	50.0	32.59
KRH25575	Soybean	nucleus	49.14	32.21
PGSC0003DMT400034191	Potato	nucleus	49.43	31.57
Solyc10g008340.2.1	Tomato	extracellular	48.57	31.19
KRH26948	Soybean	nucleus	44.57	29.32
KRH22387	Soybean	nucleus	42.29	27.56
CDY67879	Canola	nucleus	34.0	24.9
AT4G28300.1	Thale cress	nucleus	35.14	24.8
Bra024211.1-P	Field mustard	nucleus	34.0	24.44
CDY29896	Canola	nucleus	34.0	24.44
Bra026268.1-P	Field mustard	nucleus	33.14	24.37
CDX89188	Canola	nucleus	31.71	23.62
CDY14248	Canola	nucleus	32.29	23.01
CDY18985	Canola	nucleus	31.14	22.76
Bra010376.1-P	Field mustard	nucleus	31.71	22.61
CDY25250	Canola	nucleus	30.29	21.54
CDX97433	Canola	nucleus	30.29	21.54
Zm00001d012728_P001	Maize	nucleus	32.0	19.18
TraesCS3B01G327600.1	Wheat	nucleus	32.57	18.91
TraesCS3D01G292600.1	Wheat	nucleus	32.29	18.65
Os01t0754500-01	Rice	nucleus	31.43	18.52
HORVU3Hr1G072520.1	Barley	nucleus	31.43	18.24
EES03625	Sorghum	nucleus	30.0	17.89
GSMUA_Achr4P15050_001	Banana	nucleus	25.14	17.78
TraesCS3A01G292800.1	Wheat	nucleus	30.57	17.66
Os01t0672800-01	Rice	cytosol, nucleus	21.43	16.48
GSMUA_Achr4P07980_001	Banana	nucleus	21.14	15.51
Zm00001d009555_P003	Maize	endoplasmic reticulum, vacuole	22.86	15.33
TraesCS1D01G402000.1	Wheat	nucleus	22.57	14.88
TraesCS1A01G394400.1	Wheat	nucleus	22.29	14.74
Os05t0561600-01	Rice	plastid	21.71	14.67
Zm00001d038998_P001	Maize	plastid	21.71	14.5
OQU78421	Sorghum	plastid	21.14	14.26
EES03419	Sorghum	nucleus	21.43	13.94
HORVU1Hr1G086930.4	Barley	nucleus	21.14	13.94
Zm00001d043906_P002	Maize	nucleus	21.71	13.84
TraesCS1B01G422400.1	Wheat	nucleus	20.86	13.83
TraesCS3B01G305700.1	Wheat	plastid	19.14	12.5
TraesCS3D01G271600.1	Wheat	plastid	18.86	12.31
VIT_17s0000g08970.t01	Wine grape	nucleus	16.29	12.15
Zm00001d011562_P003	Maize	plastid	19.71	11.94
TraesCS3A01G272000.1	Wheat	plastid	17.14	11.28
VIT_14s0066g00800.t01	Wine grape	nucleus	15.71	9.77
KRH55962	Soybean	nucleus	0.57	0.98
VIT_12s0028g03740.t01	Wine grape	nucleus	0.0	0.0

Protein Annotations

EntrezGene:100264321	wikigene:100264321	MapMan:35.2	ProteinID:CCB47278	ProteinID:CCB47278.1	InterPro:DUF1421
UniProt:F6H5B7	EMBL:FN595235	EntrezGene:LOC100264321	wikigene:LOC100264321	PFAM:PF07223	PANTHER:PTHR31805
PANTHER:PTHR31805:SF3	TIGR:TC59093	UniParc:UPI00021083F0	ArrayExpress:VIT_12s0028g03730	EnsemblPlantsGene:VIT_12s0028g03730	EnsemblPlants:VIT_12s0028g03730.t01
unigene:Vvi.10461	RefSeq:XP_002272844	RefSeq:XP_002272844.1	RefSeq:XP_003633256	RefSeq:XP_003633256.1	SEG:seg

Description

No Description!

Coordinates

chr12:-:4612523..4613766

Molecular Weight (calculated)

38453.0 Da

IEP (calculated)

7.456

GRAVY (calculated)

-0.920

Length

350 amino acids

Sequence
(BLAST)

001: MSDVHNQQLA LALPHQVAPQ PALSTRPVEQ QQPVAAPTQS PPQNITQSPS YYLPSTQLPN ATAQTQHPQS QYLPSDPQYR TQQLQDIPRV APQPAQSQVN
101: QAPQVPSFPQ YQQQWPQQMT QQMPQQMPQQ VQMPQQPSMQ PQNRPPTTTV YPPYSAPAQP TNASPPEMLP SSMPMQMSFS GISQPGASRA DTLPYGYGAA
201: GRPVPQQPPP QHIKGTFGTQ PGDAYAASGP HPALHPGNAY MMYDNEARAH HPPQPPHFPQ GVYPPVSVSS QNPQPTVGSN LMVRNSGQPP PRNHPYNEWI
301: EKLMNMGYRG DHVVNVIQRM EESGQPIDFN SLLDRLNANP SGGSQRGWSG

Best Arabidopsis Sequence Match ( AT4G28300.2 )
(BLAST)

001: MARSSVFPTS SYSPPEDSLS QDITDTVERT MKMYADNMMR FLEGLSSRLS QLELYCYNLD KTIGEMRSEL THAHEDADVK LRSLDKHLQE VHRSVQILRD
101: KQELADTQKE LAKLQLVQKE SSSSSHSQHG EDRVATPVPE PKKSENTSDA HNQQLALALP HQIAPQPQVQ PQPQPQQHQY YMPPPPTQLQ NTPAPVPVST
201: PPSQLQAPPA QSQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPTYSPAP PGNQPPVESL PSSMQMQSPY SGPPQQSMQA YGYGAAPPPQ
301: APPQQTKMSY SPQTGDGYLP SGPPPPSGYA NAMYEGGRMQ YPPPQPQQQQ QQAHYLQGPQ GGGYSPQPHQ AGGGNIGAPP VLRSKYGELI EKLVSMGFRG
401: DHVMAVIQRM EESGQPIDFN TLLDRLSGQS SGGPPRGW

Arabidopsis Description

Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.