Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G109740.2 | |
| HORVU2Hr1G109820.1 | |
| HORVU6Hr1G053590.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28300.1 | HORVU2Hr1G109740.2 | AT3G51180.1 | 21798944 |
| AT4G28300.1 | HORVU2Hr1G109820.1 | AT3G51180.1 | 21798944 |
| AT4G28300.1 | HORVU6Hr1G053590.1 | AT4G24700.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G292600.1 | Wheat | nucleus | 94.86 | 94.39 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 93.2 | 93.2 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 80.27 | 79.87 |
| Os01t0754500-01 | Rice | nucleus | 59.37 | 60.27 |
| Zm00001d012728_P001 | Maize | nucleus | 56.72 | 58.56 |
| EES03625 | Sorghum | nucleus | 56.55 | 58.09 |
| KRH55962 | Soybean | nucleus | 15.75 | 46.57 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 36.32 | 45.91 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 11.11 | 44.37 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 34.33 | 41.82 |
| AT4G28300.1 | Thale cress | nucleus | 32.17 | 39.11 |
| CDX89188 | Canola | nucleus | 30.35 | 38.94 |
| KRH25575 | Soybean | nucleus | 34.33 | 38.76 |
| Bra026268.1-P | Field mustard | nucleus | 30.35 | 38.45 |
| CDY29896 | Canola | nucleus | 31.01 | 38.4 |
| Bra024211.1-P | Field mustard | nucleus | 31.01 | 38.4 |
| Bra010376.1-P | Field mustard | nucleus | 31.01 | 38.09 |
| CDY14248 | Canola | nucleus | 31.01 | 38.09 |
| CDY67879 | Canola | nucleus | 30.18 | 38.08 |
| CDY18985 | Canola | nucleus | 30.18 | 38.0 |
| Solyc07g053990.2.1 | Tomato | nucleus | 31.34 | 37.95 |
| CDY25250 | Canola | nucleus | 30.85 | 37.8 |
| CDX97433 | Canola | nucleus | 30.68 | 37.6 |
| PGSC0003DMT400047245 | Potato | nucleus | 32.17 | 36.13 |
| PGSC0003DMT400034191 | Potato | nucleus | 32.67 | 35.95 |
| Solyc10g008340.2.1 | Tomato | extracellular | 32.34 | 35.78 |
| KRH55961 | Soybean | cytosol | 15.75 | 34.8 |
| KRH26948 | Soybean | nucleus | 30.02 | 34.02 |
| KRH22387 | Soybean | nucleus | 29.02 | 32.59 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 18.24 | 31.43 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 25.37 | 28.81 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 21.06 | 21.34 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 19.9 | 21.02 |
Protein Annotations
| EMBL:AK369976 | EnsemblPlants:HORVU3Hr1G072520.1 | EnsemblPlantsGene:HORVU3Hr1G072520 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 |
| PANTHER:PTHR31805:SF3 | PFAM:PF07223 | SEG:seg | UniParc:UPI0002007995 | UniProt:F2E1F5 | MapMan:35.2 |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E1F5]
Coordinates
chrchr3H:+:545995484..546000802
Molecular Weight (calculated)
66300.8 Da
IEP (calculated)
6.801
GRAVY (calculated)
-1.023
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSGGPSGR GSAGGTRSFD FGTDDVLCSY DDFAAPSEPK RPDPVDKDFH ESRFGRPAVK VYEQDSYAKE DVLSAVEKCM KKYADNLLRS LEGITSRLSQ
101: LEIYCYKLER SIGELRADVL RDETDLRLKS LEKHLHEVHR SIQILRDKQE LADTQKELAK FQLTHDESKK KEDVPAPSFP EPNKPEEKRD AASQQLALAL
201: PHQVNSSALV PRASGPVQQY NDQPVQQTAP SSLVPQQDRY AVSQAIVYYP QHQAPGNQDT QGQQVQQEVQ YLPVRPQAQD VHAPSQPQSA NQSQPQSYTP
301: YQQQWQQQQP SRSSPAPVAQ QQQPFSQPFP PPVQQPQLSN AHQFPTQPAQ QSQLPNVQQF PTQPGQQSQL SNAQQFPPQQ LQPQQSNPHL PQTAQPQHPH
401: AQTQMRPQTP PNYSGGYPPH QPLNPSPETM PGSAAMQGPY NTVPPSGGTH SEVQYSYGGP GIPSQPPPQH SMQRQQLPPP GQGSFGPAPS KGAYPPQYAP
501: QGHPQGYNNT PYGGYPPSGP SAAQAPQMPP GGGGVSHPGP SHHHMMRGHP YGDMIEKAIT MGYPRDQVLN VIQRMTESGQ QIDFNALLDR LNESGSGAPP
601: RAW
101: LEIYCYKLER SIGELRADVL RDETDLRLKS LEKHLHEVHR SIQILRDKQE LADTQKELAK FQLTHDESKK KEDVPAPSFP EPNKPEEKRD AASQQLALAL
201: PHQVNSSALV PRASGPVQQY NDQPVQQTAP SSLVPQQDRY AVSQAIVYYP QHQAPGNQDT QGQQVQQEVQ YLPVRPQAQD VHAPSQPQSA NQSQPQSYTP
301: YQQQWQQQQP SRSSPAPVAQ QQQPFSQPFP PPVQQPQLSN AHQFPTQPAQ QSQLPNVQQF PTQPGQQSQL SNAQQFPPQQ LQPQQSNPHL PQTAQPQHPH
401: AQTQMRPQTP PNYSGGYPPH QPLNPSPETM PGSAAMQGPY NTVPPSGGTH SEVQYSYGGP GIPSQPPPQH SMQRQQLPPP GQGSFGPAPS KGAYPPQYAP
501: QGHPQGYNNT PYGGYPPSGP SAAQAPQMPP GGGGVSHPGP SHHHMMRGHP YGDMIEKAIT MGYPRDQVLN VIQRMTESGQ QIDFNALLDR LNESGSGAPP
601: RAW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.