Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 46.57 | 62.91 |
| KRH25575 | Soybean | nucleus | 88.24 | 33.71 |
| Solyc07g053990.2.1 | Tomato | nucleus | 69.61 | 28.51 |
| AT4G28300.1 | Thale cress | nucleus | 66.67 | 27.42 |
| Bra010376.1-P | Field mustard | nucleus | 65.69 | 27.29 |
| CDY18985 | Canola | nucleus | 62.75 | 26.72 |
| CDY14248 | Canola | nucleus | 64.22 | 26.68 |
| CDX97433 | Canola | nucleus | 64.22 | 26.63 |
| CDY25250 | Canola | nucleus | 64.22 | 26.63 |
| CDX89188 | Canola | nucleus | 61.27 | 26.6 |
| PGSC0003DMT400047245 | Potato | nucleus | 69.61 | 26.44 |
| Bra026268.1-P | Field mustard | nucleus | 61.27 | 26.26 |
| CDY67879 | Canola | nucleus | 60.29 | 25.73 |
| CDY29896 | Canola | nucleus | 60.78 | 25.46 |
| Bra024211.1-P | Field mustard | nucleus | 60.78 | 25.46 |
| KRH22387 | Soybean | nucleus | 65.69 | 24.95 |
| KRH26948 | Soybean | nucleus | 64.71 | 24.81 |
| Solyc10g008340.2.1 | Tomato | extracellular | 64.71 | 24.22 |
| PGSC0003DMT400034191 | Potato | nucleus | 64.71 | 24.09 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 50.0 | 21.38 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 43.63 | 17.98 |
| EES03625 | Sorghum | nucleus | 48.04 | 16.7 |
| Os01t0754500-01 | Rice | nucleus | 48.04 | 16.5 |
| Zm00001d012728_P001 | Maize | nucleus | 47.06 | 16.44 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 47.06 | 15.84 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 46.57 | 15.75 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 46.57 | 15.75 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 46.57 | 15.68 |
| Os05t0561600-01 | Rice | plastid | 36.76 | 14.48 |
| OQU78421 | Sorghum | plastid | 34.31 | 13.49 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 34.8 | 13.42 |
| Zm00001d038998_P001 | Maize | plastid | 34.31 | 13.36 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 33.82 | 13.07 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 33.33 | 12.81 |
| Zm00001d043906_P002 | Maize | nucleus | 33.82 | 12.57 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 32.35 | 12.43 |
| TraesCS3B01G305700.1 | Wheat | plastid | 30.88 | 11.75 |
| TraesCS3D01G271600.1 | Wheat | plastid | 30.88 | 11.75 |
| TraesCS3A01G272000.1 | Wheat | plastid | 30.39 | 11.65 |
| EES03419 | Sorghum | nucleus | 30.39 | 11.52 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 29.41 | 11.49 |
| Zm00001d011562_P003 | Maize | plastid | 31.37 | 11.07 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 21.57 | 9.67 |
| KRH56551 | Soybean | nucleus | 25.0 | 8.9 |
| KRG93222 | Soybean | nucleus | 23.53 | 8.3 |
| KRH55961 | Soybean | cytosol | 1.47 | 1.1 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 0.98 | 0.57 |
Protein Annotations
| EMBL:ACUP02004073 | EnsemblPlants:KRH55962 | EnsemblPlantsGene:GLYMA_06G2928001 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 |
| ProteinID:KRH55962 | ProteinID:KRH55962.1 | SEG:seg | UniParc:UPI0006EE0271 | UniProt:A0A0R0JMQ2 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr6:-:48157127..48161060
Molecular Weight (calculated)
22880.1 Da
IEP (calculated)
5.354
GRAVY (calculated)
-1.043
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGSSGRGN SASKGFDFAS DDILCSYDDY ANRDSTSNGN HTDPDFHKSR MARTSMFPTT AYNPPEDSLS QDVIATVEKS MKKYADNLMR FLEGISSRLS
101: QLELYCYNLD KSIGEMKSDI NRDHVEQDSR LKSLEKHVQE VHRSVQILRD KQELAETQKE LAKLQLAQKE SSSSSHSQSN EERSSPTTDP KKTDNASDAN
201: NQQL
101: QLELYCYNLD KSIGEMKSDI NRDHVEQDSR LKSLEKHVQE VHRSVQILRD KQELAETQKE LAKLQLAQKE SSSSSHSQSN EERSSPTTDP KKTDNASDAN
201: NQQL
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.