Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G271600.1 | Wheat | plastid | 64.4 | 54.66 |
| TraesCS3B01G305700.1 | Wheat | plastid | 64.4 | 54.66 |
| TraesCS3A01G272000.1 | Wheat | plastid | 63.74 | 54.51 |
| EES03419 | Sorghum | nucleus | 60.66 | 51.3 |
| Zm00001d043906_P002 | Maize | nucleus | 58.24 | 48.27 |
| Zm00001d011562_P003 | Maize | plastid | 50.11 | 39.45 |
| Os05t0561600-01 | Rice | plastid | 42.42 | 37.26 |
| Os01t0754500-01 | Rice | nucleus | 29.01 | 22.22 |
| KRH55961 | Soybean | cytosol | 13.19 | 21.98 |
| KRH55962 | Soybean | nucleus | 9.67 | 21.57 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 16.48 | 21.43 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 22.42 | 21.38 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 22.64 | 20.81 |
| KRH25575 | Soybean | nucleus | 24.4 | 20.79 |
| Solyc07g053990.2.1 | Tomato | nucleus | 22.64 | 20.68 |
| Solyc10g008340.2.1 | Tomato | extracellular | 24.4 | 20.37 |
| PGSC0003DMT400034191 | Potato | nucleus | 24.4 | 20.26 |
| CDY18985 | Canola | nucleus | 21.1 | 20.04 |
| PGSC0003DMT400047245 | Potato | nucleus | 23.3 | 19.74 |
| CDY29896 | Canola | nucleus | 21.1 | 19.71 |
| Bra024211.1-P | Field mustard | nucleus | 21.1 | 19.71 |
| CDY67879 | Canola | nucleus | 20.66 | 19.67 |
| AT4G28300.1 | Thale cress | nucleus | 21.32 | 19.56 |
| KRH26948 | Soybean | nucleus | 22.86 | 19.55 |
| Bra026268.1-P | Field mustard | nucleus | 20.44 | 19.54 |
| Bra010376.1-P | Field mustard | nucleus | 20.44 | 18.94 |
| CDY14248 | Canola | nucleus | 20.22 | 18.74 |
| KRH22387 | Soybean | nucleus | 21.98 | 18.62 |
| CDX89188 | Canola | nucleus | 19.12 | 18.51 |
| CDX97433 | Canola | nucleus | 20.0 | 18.5 |
| CDY25250 | Canola | nucleus | 20.0 | 18.5 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 5.27 | 15.89 |
| Os01t0169900-01 | Rice | plasma membrane | 19.56 | 15.34 |
| Os05t0169400-01 | Rice | plastid | 17.8 | 15.11 |
Protein Annotations
| EnsemblPlants:Os01t0672800-01 | EnsemblPlantsGene:Os01g0672800 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF5 |
| PFAM:PF07223 | ProteinID:BAS73625.1 | SEG:seg | UniParc:UPI0000DD8C64 | UniProt:A0A0N7KDH4 | MapMan:35.2 |
Description
Protein of unknown function DUF1421 domain containing protein. (Os01t0672800-01)
Coordinates
chr1:-:27631023..27633082
Molecular Weight (calculated)
49985.5 Da
IEP (calculated)
6.653
GRAVY (calculated)
-0.546
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: IGGRLSQLEL YCYKLERSIG ELRSDVMDYH SEGTVNFRCL EKNLRQVQKS VQILQDKHEI SETPNEFSKL QIAHEFPARA NEASAFSTFG RENDHSTQVA
101: KHEVAFMPLQ QVNAMQSPAV PVQSSNGYIL QQLVPVSLST QPDQQQPSQA AVYYMQSQNP IKCTESEPSE SAVHVIQSQI QNPEARVAVD LSQKSSQVTE
201: LYPQPQDQRL HLPAQQVESQ AWRTQPLVVQ PQQYNIQQVP PQLVQQQTSS PQAQSAPQVA VLYPPYSSQK PASATTEPLL RNMVVHSPYS SPQQKHHEAM
301: PSFYGQGNTV LLPSTDLNIQ HQQPQPLQQH GLSSCPPQPS KPNHCSVASY AVQGSGQSYS ATFKNPSNCA ATVVAVLPQH PASGPMAFHH LGPQVVHNQP
401: FGNMFETASV VGYPRDRVES VALPVVTAAQ PADSVAMADK LNAGSNVTSP REWSG
101: KHEVAFMPLQ QVNAMQSPAV PVQSSNGYIL QQLVPVSLST QPDQQQPSQA AVYYMQSQNP IKCTESEPSE SAVHVIQSQI QNPEARVAVD LSQKSSQVTE
201: LYPQPQDQRL HLPAQQVESQ AWRTQPLVVQ PQQYNIQQVP PQLVQQQTSS PQAQSAPQVA VLYPPYSSQK PASATTEPLL RNMVVHSPYS SPQQKHHEAM
301: PSFYGQGNTV LLPSTDLNIQ HQQPQPLQQH GLSSCPPQPS KPNHCSVASY AVQGSGQSYS ATFKNPSNCA ATVVAVLPQH PASGPMAFHH LGPQVVHNQP
401: FGNMFETASV VGYPRDRVES VALPVVTAAQ PADSVAMADK LNAGSNVTSP REWSG
001: MARSSVFPTS SYSPPEDSLS QDITDTVERT MKMYADNMMR FLEGLSSRLS QLELYCYNLD KTIGEMRSEL THAHEDADVK LRSLDKHLQE VHRSVQILRD
101: KQELADTQKE LAKLQLVQKE SSSSSHSQHG EDRVATPVPE PKKSENTSDA HNQQLALALP HQIAPQPQVQ PQPQPQQHQY YMPPPPTQLQ NTPAPVPVST
201: PPSQLQAPPA QSQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPTYSPAP PGNQPPVESL PSSMQMQSPY SGPPQQSMQA YGYGAAPPPQ
301: APPQQTKMSY SPQTGDGYLP SGPPPPSGYA NAMYEGGRMQ YPPPQPQQQQ QQAHYLQGPQ GGGYSPQPHQ AGGGNIGAPP VLRSKYGELI EKLVSMGFRG
401: DHVMAVIQRM EESGQPIDFN TLLDRLSGQS SGGPPRGW
101: KQELADTQKE LAKLQLVQKE SSSSSHSQHG EDRVATPVPE PKKSENTSDA HNQQLALALP HQIAPQPQVQ PQPQPQQHQY YMPPPPTQLQ NTPAPVPVST
201: PPSQLQAPPA QSQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPTYSPAP PGNQPPVESL PSSMQMQSPY SGPPQQSMQA YGYGAAPPPQ
301: APPQQTKMSY SPQTGDGYLP SGPPPPSGYA NAMYEGGRMQ YPPPQPQQQQ QQAHYLQGPQ GGGYSPQPHQ AGGGNIGAPP VLRSKYGELI EKLVSMGFRG
401: DHVMAVIQRM EESGQPIDFN TLLDRLSGQS SGGPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.