Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G113700.1 | Wheat | nucleus | 67.35 | 62.89 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 66.79 | 61.94 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 65.67 | 61.65 |
| Os01t0169900-01 | Rice | plasma membrane | 64.37 | 59.48 |
| EES19114 | Sorghum | nucleus | 64.55 | 59.45 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 63.62 | 59.41 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 41.6 | 40.55 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 42.54 | 40.5 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 39.93 | 39.78 |
| KRH56551 | Soybean | nucleus | 39.74 | 37.17 |
| Solyc02g086520.2.1 | Tomato | nucleus | 37.5 | 36.88 |
| VIT_17s0000g08970.t01 | Wine grape | nucleus | 31.53 | 36.03 |
| KRG93222 | Soybean | nucleus | 38.06 | 35.29 |
| AT5G14540.1 | Thale cress | nucleus | 36.01 | 35.28 |
| PGSC0003DMT400032802 | Potato | nucleus | 35.45 | 34.99 |
| CDX85594 | Canola | nucleus | 31.72 | 34.91 |
| PGSC0003DMT400072130 | Potato | nucleus | 33.4 | 34.42 |
| CDX91045 | Canola | nucleus | 31.16 | 34.36 |
| Solyc12g035240.1.1 | Tomato | nucleus | 31.53 | 34.28 |
| AT3G01560.1 | Thale cress | nucleus | 32.65 | 34.25 |
| Bra023474.1-P | Field mustard | nucleus | 34.14 | 34.14 |
| Os01t0754500-01 | Rice | nucleus | 23.13 | 20.88 |
| Os05t0561600-01 | Rice | plastid | 19.78 | 20.46 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 15.11 | 17.8 |
Protein Annotations
| EnsemblPlants:Os05t0169400-01 | EnsemblPlantsGene:Os05g0169400 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF12 |
| PFAM:PF07223 | ProteinID:BAF16676.2 | ProteinID:BAS92468.1 | SEG:seg | UniParc:UPI0001B66777 | UniProt:Q0DKE7 |
| MapMan:35.2 | : | : | : | : | : |
Description
Protein of unknown function DUF1421 family protein. (Os05t0169400-01)
Coordinates
chr5:-:4161061..4164865
Molecular Weight (calculated)
56784.9 Da
IEP (calculated)
8.078
GRAVY (calculated)
-0.766
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: FTLLPSASRR RSNSGEIPGH ARRGQQQHGG ADEVVPSYDF QPIRAAPAAA APASAASPWG SLDSKAASSN LKSAGMLESH VLKKVSHEEE RGNFSAVSIA
101: DIDRTMKKYA DNLLHALESV SSRLSQLEGR THHLENSVGE LKLIIGNYNG STDGKLRQFE NTLREVQAGV QILRDKQEIV ETQVQLSKLQ LSKAEDAQSE
201: KAGVGQADSR QQPTLPQPQH QAPPPSHPPA LPALPAPNAP PPPAPQSQPP SQFPGHLPHS QVQSVPPAPP TPLAPTIPQE SYYPPSAVQP TDTTHQQYQA
301: PPAPQSQAPP APPQHYQTPP QYAQYSQPPP ASANPSTAVP PSVHQQPEEV AAPYGPPPQS YPPNVRLPSP YVPPPSGPAP PFYGPNPGMY EPPAVRPNSG
401: PPPSYNTGYK PQGGGGFPEP YGYSGSPSHR GNAGMKSPSP FHPTGSAGSG NYSRLPTAQM LPQAASASST PSASSGNRVP IDDVVDKVAT MGFSREQVRA
501: AVRQLTESGQ NVDLNMVLDK VMNGADAQPQ RGWHGR
101: DIDRTMKKYA DNLLHALESV SSRLSQLEGR THHLENSVGE LKLIIGNYNG STDGKLRQFE NTLREVQAGV QILRDKQEIV ETQVQLSKLQ LSKAEDAQSE
201: KAGVGQADSR QQPTLPQPQH QAPPPSHPPA LPALPAPNAP PPPAPQSQPP SQFPGHLPHS QVQSVPPAPP TPLAPTIPQE SYYPPSAVQP TDTTHQQYQA
301: PPAPQSQAPP APPQHYQTPP QYAQYSQPPP ASANPSTAVP PSVHQQPEEV AAPYGPPPQS YPPNVRLPSP YVPPPSGPAP PFYGPNPGMY EPPAVRPNSG
401: PPPSYNTGYK PQGGGGFPEP YGYSGSPSHR GNAGMKSPSP FHPTGSAGSG NYSRLPTAQM LPQAASASST PSASSGNRVP IDDVVDKVAT MGFSREQVRA
501: AVRQLTESGQ NVDLNMVLDK VMNGADAQPQ RGWHGR
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.