Factsheet for VIT_17s0000g08970.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0066g00800.t01	Wine grape	nucleus	41.36	34.46
GSMUA_Achr2P14190_001	Banana	nucleus	36.67	31.97
Os05t0169400-01	Rice	plastid	36.03	31.53
EES19114	Sorghum	nucleus	36.67	29.55
Os01t0169900-01	Rice	plasma membrane	36.03	29.14
TraesCS3D01G093200.1	Wheat	nucleus	36.25	28.86
Zm00001d008708_P001	Maize	extracellular	34.54	28.77
TraesCS1D01G115300.1	Wheat	nucleus	34.97	28.57
HORVU1Hr1G025020.4	Barley	nucleus	34.75	28.55
HORVU3Hr1G016420.3	Barley	cytosol, nucleus	36.03	28.4
TraesCS1A01G113700.1	Wheat	nucleus	34.75	28.4
GSMUA_Achr6P03180_001	Banana	nucleus	33.26	28.36
TraesCS1B01G134000.1	Wheat	nucleus	34.75	28.2
TraesCS3B01G108100.1	Wheat	nucleus	35.82	27.86
Zm00001d039686_P001	Maize	nucleus	33.69	27.82
TraesCS3A01G092900.1	Wheat	nucleus	35.61	27.69
KXG31759	Sorghum	nucleus	34.33	27.38
VIT_12s0028g03740.t01	Wine grape	nucleus	5.54	17.22
VIT_12s0028g03730.t01	Wine grape	nucleus	12.15	16.29

Protein Annotations

EntrezGene:100250211	wikigene:100250211	EntrezGene:100855335	wikigene:100855335	MapMan:35.2	ProteinID:CCB42956
ProteinID:CCB42956.1	ncoils:Coil	InterPro:DUF1421	UniProt:F6GSJ1	EMBL:FN594950	EntrezGene:LOC100250211
wikigene:LOC100250211	EntrezGene:LOC100855335	wikigene:LOC100855335	PFAM:PF07223	PANTHER:PTHR31805	PANTHER:PTHR31805:SF2
UniParc:UPI000210832F	ArrayExpress:VIT_17s0000g08970	EnsemblPlantsGene:VIT_17s0000g08970	EnsemblPlants:VIT_17s0000g08970.t01	RefSeq:XP_002278237	RefSeq:XP_002278237.2
RefSeq:XP_003634257	RefSeq:XP_003634257.1	RefSeq:XP_010663116.1	RefSeq:XP_010663118.1	RefSeq:XP_010663119.1	RefSeq:XP_019082219.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:10498680..10509411

Molecular Weight (calculated)

50789.7 Da

IEP (calculated)

7.330

GRAVY (calculated)

-0.629

Length

469 amino acids

Sequence
(BLAST)

001: MDRFDSAKAA HEKVGTSYDG ALISVVDKKM KEHTDTFLHV VDALITRLSQ LESRTRNIES YVDELKASTE YNHGRTNGKL KQLENTLREV QGGIHDLRDK
101: QEIVEAQLQL AKLQVSKGKL QAENQISATQ AQIVQGISST APQQTHQPLL VPVSCQQPPP ALLSNASPSL NHQNPPPPPP PPPPPPASAA VQLPTQVPQN
201: QISFSHPGSY YLPHPPAPGT THQQCQIPPA PQSQLPPSVP HQPYQPAPQL QPSQLPQLPH VPPHLSAVNP QVPPSGHPIK EIPYMSSQSY PPSFHQPPFR
301: PPSSVPSTQQ FYKGSTLKMD EEPPSRPNSE FPTGYGTPPA YAHLSDFYAR SGSNSYSNDS TMKPLQFSPL ASVPSGGTSY TQLPTAQILP HALPTASSVG
401: GGSGPSVTGN RISSDDVVDK VAAMGFRRDL VRATVRKLTE NGQSADLNVV LDKLMNDGED QAQTVWFTR

Best Arabidopsis Sequence Match ( AT5G14540.1 )
(BLAST)

001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR

Arabidopsis Description

AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.