Factsheet for GSMUA_Achr6P03180_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P14190_001	Banana	nucleus	52.73	53.9
Os01t0169900-01	Rice	plasma membrane	47.27	44.83
Zm00001d008708_P001	Maize	extracellular	44.91	43.87
Zm00001d039686_P001	Maize	nucleus	45.09	43.66
TraesCS1A01G113700.1	Wheat	nucleus	44.91	43.03
VIT_14s0066g00800.t01	Wine grape	nucleus	43.64	42.63
HORVU1Hr1G025020.4	Barley	nucleus	44.18	42.56
EES19114	Sorghum	nucleus	44.73	42.27
TraesCS1B01G134000.1	Wheat	nucleus	43.82	41.7
TraesCS1D01G115300.1	Wheat	nucleus	43.45	41.64
Os05t0169400-01	Rice	plastid	40.55	41.6
KXG31759	Sorghum	nucleus	44.18	41.33
KRH56551	Soybean	nucleus	40.91	39.27
TraesCS3A01G092900.1	Wheat	nucleus	42.91	39.14
TraesCS3B01G108100.1	Wheat	nucleus	42.73	38.97
PGSC0003DMT400032802	Potato	nucleus	38.36	38.86
Solyc02g086520.2.1	Tomato	nucleus	38.36	38.72
TraesCS3D01G093200.1	Wheat	nucleus	41.27	38.54
HORVU3Hr1G016420.3	Barley	cytosol, nucleus	41.27	38.15
KRG93222	Soybean	nucleus	39.82	37.89
PGSC0003DMT400072130	Potato	nucleus	33.82	35.77
Solyc12g035240.1.1	Tomato	nucleus	31.64	35.29
AT3G01560.1	Thale cress	nucleus	31.64	34.05
VIT_17s0000g08970.t01	Wine grape	nucleus	28.36	33.26
CDX91045	Canola	nucleus	28.73	32.51
CDX85594	Canola	nucleus	28.36	32.03
Bra023474.1-P	Field mustard	nucleus	30.55	31.34
AT5G14540.1	Thale cress	nucleus	29.45	29.62
GSMUA_Achr4P07980_001	Banana	nucleus	18.0	20.75
GSMUA_Achr4P15050_001	Banana	nucleus	15.45	17.17

Protein Annotations

EnsemblPlants:GSMUA_Achr6P03180_001	EnsemblPlants:GSMUA_Achr6T03180_001	EnsemblPlantsGene:GSMUA_Achr6G03180_001	InterPro:DUF1421	InterPro:IPR015940	InterPro:UBA
ncoils:Coil	PANTHER:PTHR31805	PANTHER:PTHR31805:SF12	PFAM:PF07223	PFscan:PS50030	SEG:seg
UniParc:UPI0002966375	UniProt:M0T3R6	MapMan:35.2	:	:	:

Description

retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G03180_001]

Coordinates

chr6:+:2172417..2177397

Molecular Weight (calculated)

59209.9 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.797

Length

550 amino acids

Sequence
(BLAST)

001: MNASKFMDKQ IMELSGSSAP ADKFFDLLNP QEDHQIDGAA SGGGSSVKKE QQQQGEKAEI FPSYEFHPIR AVGSSSPPTT GGGLGGSWPT WGSVDSKLAS
101: FNLQNAGILE PHEPTKASHQ KEKSTYDVAM VAEIDTTVKR YADNLMNALE GVNSRLLQLE NRTHHLENSV DELKVAIGNN NGSTDGRLRQ FDNILREVQS
201: GVQILRDKQD IVEAQLHLAQ LKASKGEQQQ QQNSKTVQPD SRQHEVPASQ QPIQQSYQQP VPPAQPTVLP APQVPNAPPP APQQIPPLHM HPQLPQPQVP
301: SVPSLPRESG FPPAAQHAEA THQQYQVPVQ HPQAAPPPPP SGPQHYQPPH LPQYSQPPQS QHSVNPTQQQ PPPIPQHAEE SAPYAPPPQS YPPSIYQPAT
401: FPQPLSGPPQ QFFVPNSSMY GPPTSKPNSG PPPSSGYGPP TGPSYSDSAY GGLPSGQSSS PMKHFTPSVP SGGSSNYPRL PTARILPQAP QTASGSSSPS
501: GTRLPIDDVV EKVATMGFSR DQVRATVRKL TENGQSVDLN VVLDRLMNDG

Best Arabidopsis Sequence Match ( AT5G14540.1 )
(BLAST)

001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR

Arabidopsis Description

AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.