Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P19920_001 | |
| GSMUA_Achr3P11230_001 | |
| GSMUA_Achr6P34020_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28300.1 | GSMUA_Achr6P34020_001 | AT2G39740.1 | 21798944 |
| AT4G28300.1 | GSMUA_Achr1P19920_001 | AT3G51180.1 | 21798944 |
| AT4G28300.1 | GSMUA_Achr3P11230_001 | AT3G51180.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P07980_001 | Banana | nucleus | 50.1 | 51.99 |
| KRH55962 | Soybean | nucleus | 17.98 | 43.63 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 11.92 | 39.07 |
| Zm00001d012728_P001 | Maize | nucleus | 41.21 | 34.93 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 41.82 | 34.33 |
| Os01t0754500-01 | Rice | nucleus | 40.4 | 33.67 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 41.01 | 33.66 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 40.81 | 33.33 |
| AT4G28300.1 | Thale cress | nucleus | 33.33 | 33.27 |
| EES03625 | Sorghum | nucleus | 39.19 | 33.05 |
| Solyc07g053990.2.1 | Tomato | nucleus | 33.13 | 32.93 |
| CDY18985 | Canola | nucleus | 30.91 | 31.94 |
| Bra026268.1-P | Field mustard | nucleus | 30.71 | 31.93 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 38.79 | 31.68 |
| CDX89188 | Canola | nucleus | 29.9 | 31.49 |
| CDY14248 | Canola | nucleus | 30.91 | 31.16 |
| PGSC0003DMT400047245 | Potato | nucleus | 33.74 | 31.1 |
| CDY29896 | Canola | nucleus | 30.51 | 31.01 |
| Bra024211.1-P | Field mustard | nucleus | 30.51 | 31.01 |
| CDY67879 | Canola | nucleus | 29.9 | 30.96 |
| CDX97433 | Canola | nucleus | 30.51 | 30.69 |
| PGSC0003DMT400034191 | Potato | nucleus | 33.94 | 30.66 |
| CDY25250 | Canola | nucleus | 30.3 | 30.49 |
| Solyc10g008340.2.1 | Tomato | extracellular | 33.54 | 30.46 |
| Bra010376.1-P | Field mustard | nucleus | 29.9 | 30.14 |
| KRH25575 | Soybean | nucleus | 32.32 | 29.96 |
| OQU78421 | Sorghum | plastid | 27.88 | 26.59 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 27.88 | 26.09 |
| Os05t0561600-01 | Rice | plastid | 27.27 | 26.06 |
| KRH26948 | Soybean | nucleus | 27.68 | 25.75 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 27.47 | 25.61 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 27.47 | 25.61 |
| Zm00001d038998_P001 | Maize | plastid | 27.07 | 25.57 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 27.27 | 25.57 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 17.78 | 25.14 |
| KRH22387 | Soybean | nucleus | 26.26 | 24.21 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 25.45 | 24.14 |
| KRH55961 | Soybean | cytosol | 12.93 | 23.44 |
| Zm00001d043906_P002 | Maize | nucleus | 25.45 | 22.95 |
| TraesCS3A01G272000.1 | Wheat | plastid | 24.44 | 22.74 |
| EES03419 | Sorghum | nucleus | 24.65 | 22.68 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 20.81 | 22.64 |
| TraesCS3D01G271600.1 | Wheat | plastid | 23.84 | 22.01 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.84 | 22.01 |
| Zm00001d011562_P003 | Maize | plastid | 25.05 | 21.45 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 17.78 | 16.36 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 17.17 | 15.45 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P15050_001 | EnsemblPlants:GSMUA_Achr4T15050_001 | EnsemblPlantsGene:GSMUA_Achr4G15050_001 | InterPro:DUF1421 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 |
| PFAM:PF07223 | SEG:seg | UniParc:UPI000296C133 | UniProt:M0SP20 | MapMan:35.2 | : |
Description
Putative protein of unknown function DUF1421 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G15050_001]
Coordinates
chr4:-:11339771..11343485
Molecular Weight (calculated)
54520.9 Da
IEP (calculated)
6.795
GRAVY (calculated)
-0.724
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGESSGRA AASDSNSFDF GSDDVLCPYG DYAAQDPSIG KRSNLPGTVF SFLDLDIQEC RMGRSLVSAY EKEDCSKYSV TSSVEKCMKK YADTLLQSLE
101: AISGRLSQME IHFHKLEQSL CELRGDFIQD QSDKDLNFKS LEKHLQEVHR SVQIMRDKQE LAETHKELAK LQMVQKESVE KKEEVVARSV SEPKKLDDKP
201: DVANQQLALA LPRPATSPPI LPDGTSQSIQ PQAARYYHHH QTLPHSQPVQ ARPQLQDGPV QAPPRQPLIA NQNRPPSFSQ YQQQLPSQPA QHLAQQVAQP
301: QQPASQTQPS YPPYPPQPVP ATFPDSSVPT QVPQPNVTAI RPEVLPFGDG RTGSLGSQPH LHNMQQPMLS PVSQSSFGSQ LSKGSYMGGS TTHPPPPYNL
401: QGYNAASSYP PNNNFPVARN QQIPPSNSAA LPYDSRLTRN HSYGEMIEKA VGMGYDRNQI IGAVQRMVES GQPMDFHSLL DRLNGQAAAA PARAW
101: AISGRLSQME IHFHKLEQSL CELRGDFIQD QSDKDLNFKS LEKHLQEVHR SVQIMRDKQE LAETHKELAK LQMVQKESVE KKEEVVARSV SEPKKLDDKP
201: DVANQQLALA LPRPATSPPI LPDGTSQSIQ PQAARYYHHH QTLPHSQPVQ ARPQLQDGPV QAPPRQPLIA NQNRPPSFSQ YQQQLPSQPA QHLAQQVAQP
301: QQPASQTQPS YPPYPPQPVP ATFPDSSVPT QVPQPNVTAI RPEVLPFGDG RTGSLGSQPH LHNMQQPMLS PVSQSSFGSQ LSKGSYMGGS TTHPPPPYNL
401: QGYNAASSYP PNNNFPVARN QQIPPSNSAA LPYDSRLTRN HSYGEMIEKA VGMGYDRNQI IGAVQRMVES GQPMDFHSLL DRLNGQAAAA PARAW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.