CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX73744
CDX77980
CDX93239
CDX96988
CDY07030
CDY11030
CDY31293
CDY33994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	CDX93239	AT2G39740.1	21798944
AT4G28300.1	CDY07030	AT2G39740.1	21798944
AT4G28300.1	CDX73744	AT3G51180.1	21798944
AT4G28300.1	CDX77980	AT3G51180.1	21798944
AT4G28300.1	CDY11030	AT4G24700.1	21798944
AT4G28300.1	CDX69849	AT5G10270.1	21798944
AT4G28300.1	CDX96988	AT5G10270.1	21798944
AT4G28300.1	CDY31293	AT5G64960.1	21798944
AT4G28300.1	CDY33994	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97433	Canola	nucleus	99.59	99.59
CDY14248	Canola	nucleus	89.02	89.21
CDY18985	Canola	nucleus	76.83	78.91
CDX89188	Canola	nucleus	74.8	78.3
AT4G28300.1	Thale cress	nucleus	78.86	78.23
CDY29896	Canola	nucleus	76.22	77.0
CDY67879	Canola	nucleus	73.58	75.73
VIT_12s0028g03740.t01	Wine grape	nucleus	19.72	64.24
KRH55962	Soybean	nucleus	26.63	64.22
Solyc07g053990.2.1	Tomato	nucleus	48.58	47.99
KRH25575	Soybean	nucleus	50.2	46.25
PGSC0003DMT400047245	Potato	nucleus	48.98	44.88
Solyc10g008340.2.1	Tomato	extracellular	48.58	43.85
PGSC0003DMT400034191	Potato	nucleus	47.56	42.7
KRH26948	Soybean	nucleus	43.9	40.6
KRH22387	Soybean	nucleus	42.68	39.11
KRH55961	Soybean	cytosol	20.12	36.26
GSMUA_Achr4P07980_001	Banana	nucleus	32.72	33.75
Zm00001d012728_P001	Maize	nucleus	37.8	31.85
TraesCS3A01G292800.1	Wheat	nucleus	38.21	31.02
HORVU3Hr1G072520.1	Barley	nucleus	37.8	30.85
TraesCS3B01G327600.1	Wheat	nucleus	37.4	30.51
TraesCS3D01G292600.1	Wheat	nucleus	37.4	30.36
EES03625	Sorghum	nucleus	36.18	30.32
GSMUA_Achr4P15050_001	Banana	nucleus	30.49	30.3
VIT_12s0028g03730.t01	Wine grape	nucleus	21.54	30.29
Os01t0754500-01	Rice	nucleus	36.38	30.13
TraesCS1A01G394400.1	Wheat	nucleus	25.61	23.82
Os05t0561600-01	Rice	plastid	24.59	23.36
TraesCS1D01G402000.1	Wheat	nucleus	25.2	23.35
HORVU1Hr1G086930.4	Barley	nucleus	24.8	22.98
TraesCS1B01G422400.1	Wheat	nucleus	24.59	22.92
CDX91045	Canola	nucleus	22.36	22.63
OQU78421	Sorghum	plastid	23.78	22.54
CDX85594	Canola	nucleus	21.95	22.18
Zm00001d009555_P003	Maize	endoplasmic reticulum, vacuole	22.97	21.65
TraesCS3D01G271600.1	Wheat	plastid	23.58	21.64
TraesCS3B01G305700.1	Wheat	plastid	23.37	21.46
Zm00001d038998_P001	Maize	plastid	22.76	21.37
Zm00001d043906_P002	Maize	nucleus	23.58	21.13
TraesCS3A01G272000.1	Wheat	plastid	22.76	21.05
EES03419	Sorghum	nucleus	22.56	20.63
Os01t0672800-01	Rice	cytosol, nucleus	18.5	20.0
Zm00001d011562_P003	Maize	plastid	21.34	18.17

Protein Annotations

EnsemblPlants:CDY25250	EnsemblPlantsGene:GSBRNA2T00029287001	InterPro:DUF1421	PANTHER:PTHR31805	PANTHER:PTHR31805:SF3	PFAM:PF07223
ProteinID:CDY25250	ProteinID:CDY25250.1	SEG:seg	UniParc:UPI0004EF27C2	UniProt:A0A078GFJ7	MapMan:35.2

Description

BnaA02g22060DBnaA02g22060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFJ7]

Coordinates

chrLK032172:-:134249..136290

Molecular Weight (calculated)

53583.1 Da

IEP (calculated)

6.347

GRAVY (calculated)

-0.947

Length

492 amino acids

Sequence
(BLAST)

001: MASGASGRVN PGSKGFDFGS DDILCSYDDF TNHDSSDGSN SDPAIGASNS NKEFHKTRMA RSSVFPTGSY APPEDSLREE ELTATVERSM KKYSDNMMRF
101: LEGLSSRLSQ LELYCYNLDK TIGEMRSDLT RHNEEADVKL RSLDKHLQEV HRSVQVLRDK QELADTQKEL ARLQLVSKDS SSSSHSQHGE ERVATPVPEH
201: KKNENTSDAP NLQLALALPH QISPQPPTQP QQQQQYYMPP ATQLQNTPAP APVPPPPSQP QAPPAQAHFM PPPAAPSHPS SAQTQSFPQY QQNWPPQPQA
301: RPQSSGAYQP YTPPAPPSNQ SPVEPLPSSM QSPYGGPPQQ SMQAYGYGAP PAQVPQQTKM SYSPQTGDGY PPSGPPPPGY ANTMYEGGRI MQYPPSQPHQ
401: QQQQGHYMQG PPGGGYAPQQ HQAGGGGNTG TPSPVLRSKY GELIEKLVSM GFRGDHVMAV IQRMEESGQA IDFNALLDRL SVQSSGGPPR GW

Best Arabidopsis Sequence Match ( AT5G14540.1 )
(BLAST)

001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR

Arabidopsis Description

AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.