Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85594 | Canola | nucleus | 79.84 | 79.67 |
| Bra023474.1-P | Field mustard | nucleus | 76.75 | 69.59 |
| AT5G14540.1 | Thale cress | nucleus | 58.64 | 52.1 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 47.12 | 40.67 |
| KRG93222 | Soybean | nucleus | 45.88 | 38.58 |
| PGSC0003DMT400032802 | Potato | nucleus | 41.36 | 37.02 |
| KRH56551 | Soybean | nucleus | 43.21 | 36.65 |
| Solyc02g086520.2.1 | Tomato | nucleus | 40.33 | 35.96 |
| Solyc12g035240.1.1 | Tomato | nucleus | 34.16 | 33.67 |
| Os01t0169900-01 | Rice | plasma membrane | 38.89 | 32.59 |
| Zm00001d039686_P001 | Maize | nucleus | 38.07 | 32.57 |
| Zm00001d008708_P001 | Maize | extracellular | 37.04 | 31.97 |
| EES19114 | Sorghum | nucleus | 38.07 | 31.79 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 34.98 | 31.6 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 37.04 | 31.52 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 37.45 | 31.49 |
| TraesCS1A01G113700.1 | Wheat | nucleus | 37.04 | 31.36 |
| PGSC0003DMT400072130 | Potato | nucleus | 33.54 | 31.35 |
| Os05t0169400-01 | Rice | plastid | 34.36 | 31.16 |
| KXG31759 | Sorghum | nucleus | 37.65 | 31.12 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 36.63 | 31.01 |
| TraesCS3D01G093200.1 | Wheat | nucleus | 36.42 | 30.05 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 37.24 | 30.02 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 36.42 | 29.35 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 35.19 | 28.74 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 32.51 | 28.73 |
| CDY67879 | Canola | nucleus | 22.84 | 23.22 |
| CDX97433 | Canola | nucleus | 22.84 | 22.56 |
| CDX89188 | Canola | nucleus | 21.81 | 22.55 |
| CDY14248 | Canola | nucleus | 22.63 | 22.4 |
| CDY25250 | Canola | nucleus | 22.63 | 22.36 |
| CDY29896 | Canola | nucleus | 21.81 | 21.77 |
| CDY18985 | Canola | nucleus | 21.4 | 21.71 |
Protein Annotations
| EnsemblPlants:CDX91045 | EnsemblPlantsGene:GSBRNA2T00151813001 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF2 |
| PFAM:PF07223 | ProteinID:CDX91045 | ProteinID:CDX91045.1 | SEG:seg | UniParc:UPI0004EF0902 | MapMan:35.2 |
Description
BnaC02g05520D
Coordinates
chrLK031865:+:486883..488992
Molecular Weight (calculated)
52838.6 Da
IEP (calculated)
6.358
GRAVY (calculated)
-0.786
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTTRFSDKQ IMDLMNDNIS NDGDHQRSRV DDTNDLVSKK EAIVPSYDFQ PIRPNATVGL SHSALDLAGS VNSTAARGFT ASDFYPVKSS ARSYGSVDSI
101: EPSKLFAEKE RTNPETAILS EIDRVMKKHA DDLMNVMEGV SARLTQLESR TRNLENLVDD VKVSVGNSHG NTDGKMRQLE NIMLEVQSGV QLLKDKQEIL
201: EAQLQLSKLQ VPKVDQRSDK HSTHVEHTAQ PPAALPQPPA SAAAPPSLTQ QGLPPQQFIQ QHRVLFLPSW WWSSLHQPPY QPPPQQPQYP QQPPPQLQQP
301: SSGYNPEEPP YPYSSNPPRQ QPPPAPATSQ QYYNNPPTPP SMYDGPGGRS SSGFPSGYSP ETYPYTTPPS SQFGNTQTMK PSHQSGGGGG GGSGYPQIPM
401: ARPLPQALPM ATAISSGGSG GGGSVDDVID KVSSMGFPRD QVRGTVRALT ENGQAVDLNT VLDKLMNGGV MQQQQQQPPR GWFGGR
101: EPSKLFAEKE RTNPETAILS EIDRVMKKHA DDLMNVMEGV SARLTQLESR TRNLENLVDD VKVSVGNSHG NTDGKMRQLE NIMLEVQSGV QLLKDKQEIL
201: EAQLQLSKLQ VPKVDQRSDK HSTHVEHTAQ PPAALPQPPA SAAAPPSLTQ QGLPPQQFIQ QHRVLFLPSW WWSSLHQPPY QPPPQQPQYP QQPPPQLQQP
301: SSGYNPEEPP YPYSSNPPRQ QPPPAPATSQ QYYNNPPTPP SMYDGPGGRS SSGFPSGYSP ETYPYTTPPS SQFGNTQTMK PSHQSGGGGG GGSGYPQIPM
401: ARPLPQALPM ATAISSGGSG GGGSVDDVID KVSSMGFPRD QVRGTVRALT ENGQAVDLNT VLDKLMNGGV MQQQQQQPPR GWFGGR
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.