Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039686_P001 | Maize | nucleus | 84.72 | 83.98 |
| KXG31759 | Sorghum | nucleus | 85.97 | 82.31 |
| Os01t0169900-01 | Rice | plasma membrane | 76.55 | 74.31 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 63.06 | 58.87 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 61.99 | 58.66 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 62.7 | 58.54 |
| TraesCS3D01G093200.1 | Wheat | nucleus | 59.86 | 57.22 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 43.87 | 44.91 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 39.79 | 41.64 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 40.5 | 40.5 |
| KRH56551 | Soybean | nucleus | 39.79 | 39.09 |
| KRG93222 | Soybean | nucleus | 39.61 | 38.58 |
| Solyc02g086520.2.1 | Tomato | nucleus | 37.3 | 38.53 |
| CDX85594 | Canola | nucleus | 32.5 | 37.58 |
| CDX91045 | Canola | nucleus | 31.97 | 37.04 |
| PGSC0003DMT400032802 | Potato | nucleus | 35.7 | 37.02 |
| PGSC0003DMT400072130 | Potato | nucleus | 33.75 | 36.54 |
| AT3G01560.1 | Thale cress | nucleus | 32.86 | 36.2 |
| Bra023474.1-P | Field mustard | nucleus | 34.46 | 36.19 |
| AT5G14540.1 | Thale cress | nucleus | 34.64 | 35.65 |
| Solyc12g035240.1.1 | Tomato | nucleus | 31.08 | 35.5 |
| VIT_17s0000g08970.t01 | Wine grape | nucleus | 28.77 | 34.54 |
| Zm00001d012728_P001 | Maize | nucleus | 20.96 | 20.21 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 17.58 | 18.97 |
| Zm00001d038998_P001 | Maize | plastid | 16.7 | 17.94 |
| Zm00001d043906_P002 | Maize | nucleus | 14.39 | 14.75 |
| Zm00001d011562_P003 | Maize | plastid | 14.21 | 13.84 |
Protein Annotations
| EnsemblPlants:Zm00001d008708_P001 | EnsemblPlants:Zm00001d008708_T001 | EnsemblPlantsGene:Zm00001d008708 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 |
| PANTHER:PTHR31805:SF12 | PFAM:PF07223 | ProteinID:AQK90459.1 | SEG:seg | UniParc:UPI000220C5CC | UniProt:K7VAN4 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative DUF1421 domain family protein
Coordinates
chr8:-:17549354..17554751
Molecular Weight (calculated)
59271.0 Da
IEP (calculated)
6.294
GRAVY (calculated)
-0.647
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: MNASQFMDKQ ILGLAASASP SGGGAGGGGG VDLSDLMIPI PQEDAENRLG RRRSSTSVNG TADDMLPSYD FQPIRTSGGA AAAAAPQASW GSLDSKAPSA
101: SYNLKSAGIL EPHVLKKVSH EEDKSNFPTV TIADIDRTMK KYSDNLLHAL EGVSSRLSQM EGRTHQLENS VDELKLTIGN YNGSTDGKLR NLENMLREVQ
201: AGVQILRDKQ EIVETQLHLA KLQTNKTDGQ SSENSGSGQA GLQQQPVVPP QAAIQPQQVL TPSQPPALPA LPAPNAPPPP PTLQNQSSLQ FPSHLQHSQV
301: PSVPSVALAP TVPALPRDAY YAPSAQPTET MHQQYQAPPV PQPQAPPAPP QQYQSQTQFP QYAQPPQPAN VNPSTPHVPH APQQPEETMP YAPAQSYPPN
401: AIAAPYMQPP SGPAPPYYGQ QNPSMYEPPA GRANPGPPSS YGSGGYGPQG GGSFSESYGY TGSPSHRGNA GMKQSSPFAQ SSGGSGSYGS GKLPTAQMLP
501: QAVPISSSST SGSSGNRVPL DDVVEKVATM GFSREQVRAT VRRLTENGQN VDLNVVLDKL MNG
101: SYNLKSAGIL EPHVLKKVSH EEDKSNFPTV TIADIDRTMK KYSDNLLHAL EGVSSRLSQM EGRTHQLENS VDELKLTIGN YNGSTDGKLR NLENMLREVQ
201: AGVQILRDKQ EIVETQLHLA KLQTNKTDGQ SSENSGSGQA GLQQQPVVPP QAAIQPQQVL TPSQPPALPA LPAPNAPPPP PTLQNQSSLQ FPSHLQHSQV
301: PSVPSVALAP TVPALPRDAY YAPSAQPTET MHQQYQAPPV PQPQAPPAPP QQYQSQTQFP QYAQPPQPAN VNPSTPHVPH APQQPEETMP YAPAQSYPPN
401: AIAAPYMQPP SGPAPPYYGQ QNPSMYEPPA GRANPGPPSS YGSGGYGPQG GGSFSESYGY TGSPSHRGNA GMKQSSPFAQ SSGGSGSYGS GKLPTAQMLP
501: QAVPISSSST SGSSGNRVPL DDVVEKVATM GFSREQVRAT VRRLTENGQN VDLNVVLDKL MNG
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.