Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072130 | Potato | nucleus | 65.11 | 61.73 |
| Solyc02g086520.2.1 | Tomato | nucleus | 49.9 | 45.14 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 44.62 | 39.08 |
| KRH56551 | Soybean | nucleus | 42.8 | 36.82 |
| KRG93222 | Soybean | nucleus | 42.6 | 36.33 |
| AT3G01560.1 | Thale cress | nucleus | 35.7 | 34.44 |
| CDX91045 | Canola | nucleus | 33.67 | 34.16 |
| CDX85594 | Canola | nucleus | 33.47 | 33.88 |
| Bra023474.1-P | Field mustard | nucleus | 35.09 | 32.28 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 35.29 | 31.64 |
| TraesCS1A01G113700.1 | Wheat | nucleus | 36.71 | 31.53 |
| Os05t0169400-01 | Rice | plastid | 34.28 | 31.53 |
| Zm00001d039686_P001 | Maize | nucleus | 36.11 | 31.34 |
| KXG31759 | Sorghum | nucleus | 37.12 | 31.12 |
| Zm00001d008708_P001 | Maize | extracellular | 35.5 | 31.08 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 36.11 | 31.01 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 36.31 | 30.97 |
| AT5G14540.1 | Thale cress | nucleus | 34.28 | 30.9 |
| Os01t0169900-01 | Rice | plasma membrane | 36.31 | 30.86 |
| EES19114 | Sorghum | nucleus | 36.31 | 30.76 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 35.09 | 30.3 |
| TraesCS3D01G093200.1 | Wheat | nucleus | 35.5 | 29.71 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 32.25 | 29.55 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 35.09 | 28.69 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 34.48 | 28.57 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 34.89 | 28.52 |
| Solyc10g008340.2.1 | Tomato | extracellular | 21.5 | 19.45 |
| Solyc07g053990.2.1 | Tomato | nucleus | 18.66 | 18.47 |
Protein Annotations
| EnsemblPlants:Solyc12g035240.1.1 | EnsemblPlantsGene:Solyc12g035240.1 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF2 |
| PFAM:PF07223 | SEG:seg | UniParc:UPI0002769D0D | UniProt:K4DDZ0 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr12:-:59323517..59329365
Molecular Weight (calculated)
53741.7 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.629
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSTNNDFI NLHDDQHHIT AGVNHPVRPI ESFPNCSIHW APDTKTNTNY SSPDSIEPAK LIVEKDLSTI DASLLSEIDH TVKKYADNLL HAIESVSARL
101: SQLETRSRQI EDFVVKLKLS VDNNHGNTDG KLRLVENILR EVQDGVQVIK NKQDIMETQL QLGKLQVPKE IDSSIVDSAH HRASAPLQSH QQFPPVVLAQ
201: PPSPLPPPNA PPPPLQQKIP SQVELQDQFP QNLIPSGTQR ETYFPLTGQA PENSSQQNQQ SAPHQRLQTS IPPPPHQQYL PFPSSLYTQP PVPSQAHSPL
301: PSVNPSQSQP PLIHHPEERH FIASQTYPQA NTSQFPSHPS SGAPVSHHFY AAPANLFEPP SSRQGSGFSS AYGPSTGPGE SYPYSGSTVQ YGSGSPFKSQ
401: QLASPLMGQS GGNGYPQLPT TRILPQALPT AFAVSSGSSS PRTGNRVPID DVVDKVTNMG FPRDQVRATV QRLTENGQSV DLNVVLDKLM NGG
101: SQLETRSRQI EDFVVKLKLS VDNNHGNTDG KLRLVENILR EVQDGVQVIK NKQDIMETQL QLGKLQVPKE IDSSIVDSAH HRASAPLQSH QQFPPVVLAQ
201: PPSPLPPPNA PPPPLQQKIP SQVELQDQFP QNLIPSGTQR ETYFPLTGQA PENSSQQNQQ SAPHQRLQTS IPPPPHQQYL PFPSSLYTQP PVPSQAHSPL
301: PSVNPSQSQP PLIHHPEERH FIASQTYPQA NTSQFPSHPS SGAPVSHHFY AAPANLFEPP SSRQGSGFSS AYGPSTGPGE SYPYSGSTVQ YGSGSPFKSQ
401: QLASPLMGQS GGNGYPQLPT TRILPQALPT AFAVSSGSSS PRTGNRVPID DVVDKVTNMG FPRDQVRATV QRLTENGQSV DLNVVLDKLM NGG
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.