Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G134000.1 | Wheat | nucleus | 92.86 | 92.21 |
| HORVU1Hr1G025020.4 | Barley | nucleus | 91.29 | 91.77 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 90.42 | 90.42 |
| Os05t0169400-01 | Rice | plastid | 62.89 | 67.35 |
| EES19114 | Sorghum | nucleus | 62.72 | 61.86 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 57.32 | 54.56 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 43.03 | 44.91 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 43.03 | 43.87 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 39.72 | 42.38 |
| KRH56551 | Soybean | nucleus | 41.81 | 41.88 |
| KRG93222 | Soybean | nucleus | 40.94 | 40.66 |
| Solyc02g086520.2.1 | Tomato | nucleus | 38.15 | 40.18 |
| AT3G01560.1 | Thale cress | nucleus | 34.67 | 38.94 |
| PGSC0003DMT400072130 | Potato | nucleus | 35.19 | 38.85 |
| PGSC0003DMT400032802 | Potato | nucleus | 36.06 | 38.12 |
| CDX85594 | Canola | nucleus | 31.71 | 37.37 |
| CDX91045 | Canola | nucleus | 31.36 | 37.04 |
| Solyc12g035240.1.1 | Tomato | nucleus | 31.53 | 36.71 |
| AT5G14540.1 | Thale cress | nucleus | 34.49 | 36.2 |
| Bra023474.1-P | Field mustard | nucleus | 33.28 | 35.63 |
| VIT_17s0000g08970.t01 | Wine grape | nucleus | 28.4 | 34.75 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 20.91 | 19.8 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 15.51 | 16.82 |
| TraesCS3A01G272000.1 | Wheat | plastid | 13.76 | 14.85 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G113700.1 | EnsemblPlantsGene:TraesCS1A01G113700 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF12 |
| PFAM:PF07223 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1A:-:117194226..117198223
Molecular Weight (calculated)
60606.6 Da
IEP (calculated)
6.279
GRAVY (calculated)
-0.661
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MNASQFMDKQ ILGLAAAGAA SSPPSGGSGG GGQLFDLMGP NPQEDDVVES HDLHARRGAS ATEEVMVPSY DFQPIRTPAA AVAPAAPAPA AANAWGSLDA
101: NAASPKLKSA AMMEPRVLKK VSHEEERSNF NAVTIADIDR TMKKYADNLL HAMEGVSSRL AQLEGRTHHL EDSVGELKLT VGNYNGSTDG KLRQFENTLR
201: EVQAGVQILR DKQEIVEAQV QLTKLQVSKA EDVKSENASA GQVDSRQQPP APQPTVQPQH QAYPPSQPTV LPALPAPNAP PPPMVNNQPP PQFQGHLPHP
301: QMQSVAPAPS VPTISQESYY PPSTQTTEAA HQQYQAPPAS QPQAPPAAPQ HYQHPPQYAP YSQPPLPGSV NPQTPAAPLP HQPEEAAPYG PPAQSYPLNV
401: RPPSPYMPPP SGPVPPFYGP NPGMYEPPAV RPNSGPPPPY SAGYKQQGGG GFPEQYGYSG SPSHRGNAGM NSPSPFAPTG PSSAGSGNYG KLPTAQILPQ
501: AAPVSSAPSA SSGNRVAVDD VVDKVSTMGF SKEQVRATVR RLTENGQNVD LNVVLDKLMN DSDAQPAQRG WFGR
101: NAASPKLKSA AMMEPRVLKK VSHEEERSNF NAVTIADIDR TMKKYADNLL HAMEGVSSRL AQLEGRTHHL EDSVGELKLT VGNYNGSTDG KLRQFENTLR
201: EVQAGVQILR DKQEIVEAQV QLTKLQVSKA EDVKSENASA GQVDSRQQPP APQPTVQPQH QAYPPSQPTV LPALPAPNAP PPPMVNNQPP PQFQGHLPHP
301: QMQSVAPAPS VPTISQESYY PPSTQTTEAA HQQYQAPPAS QPQAPPAAPQ HYQHPPQYAP YSQPPLPGSV NPQTPAAPLP HQPEEAAPYG PPAQSYPLNV
401: RPPSPYMPPP SGPVPPFYGP NPGMYEPPAV RPNSGPPPPY SAGYKQQGGG GFPEQYGYSG SPSHRGNAGM NSPSPFAPTG PSSAGSGNYG KLPTAQILPQ
501: AAPVSSAPSA SSGNRVAVDD VVDKVSTMGF SKEQVRATVR RLTENGQNVD LNVVLDKLMN DSDAQPAQRG WFGR
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.