Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G113700.1 | Wheat | nucleus | 91.77 | 91.29 |
| TraesCS1B01G134000.1 | Wheat | nucleus | 89.84 | 88.75 |
| TraesCS1D01G115300.1 | Wheat | nucleus | 89.14 | 88.68 |
| Os05t0169400-01 | Rice | plastid | 61.65 | 65.67 |
| EES19114 | Sorghum | nucleus | 61.82 | 60.65 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 55.17 | 52.94 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 43.78 | 44.41 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 42.56 | 44.18 |
| KRH56551 | Soybean | nucleus | 42.91 | 42.76 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 39.58 | 42.01 |
| KRG93222 | Soybean | nucleus | 41.33 | 40.83 |
| Solyc02g086520.2.1 | Tomato | nucleus | 36.95 | 38.72 |
| AT3G01560.1 | Thale cress | nucleus | 34.33 | 38.36 |
| PGSC0003DMT400032802 | Potato | nucleus | 35.38 | 37.2 |
| CDX91045 | Canola | nucleus | 31.52 | 37.04 |
| CDX85594 | Canola | nucleus | 31.35 | 36.76 |
| PGSC0003DMT400072130 | Potato | nucleus | 33.45 | 36.73 |
| Bra023474.1-P | Field mustard | nucleus | 33.63 | 35.82 |
| AT5G14540.1 | Thale cress | nucleus | 34.15 | 35.65 |
| Solyc12g035240.1.1 | Tomato | nucleus | 30.3 | 35.09 |
| VIT_17s0000g08970.t01 | Wine grape | nucleus | 28.55 | 34.75 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 21.02 | 19.9 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 15.59 | 16.76 |
Protein Annotations
| EMBL:AK370702 | EnsemblPlants:HORVU1Hr1G025020.4 | EnsemblPlantsGene:HORVU1Hr1G025020 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 |
| PANTHER:PTHR31805:SF12 | PFAM:PF07223 | SEG:seg | UniParc:UPI00020080F8 | UniProt:F2E3H9 | MapMan:35.2 |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E3H9]
Coordinates
chrchr1H:-:118930043..118936273
Molecular Weight (calculated)
60216.1 Da
IEP (calculated)
6.235
GRAVY (calculated)
-0.651
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSQFMDKQ ILGLAASGAA SSPPSGGGGG GGQLFDLMGP NPQEDDVVES HGLHARRGAS ATEEVMVPSY DFQSIRTAAA PVAPAPAAAN AWGSLDANAA
101: SPKLKTAAMM EPRVLKKVSH EEERSNFNAV TIADIDRTMK KYADNLLHAL EGVSSRLAQL EGRTHHLEDS VGELKLTVGN YNGSTDGKLR QFENTLREVQ
201: AGVQILRDKQ EIVEAQVQLT KLQVSKAEDV ESENASAGQV DSRQQLTAPQ PTVQQQHQAY PPSQPTGLPA LPAPNAPPPP MVHNQPPPQF QGHLPHPQMQ
301: SVAPAPSGPT ISQESYYPPS TQTTEAAHQQ YQAPPASQPQ APPAAPQHYQ HLPQYAPYSQ PPLPGSANPQ SAAASLPQQP EEAAPYGPPA QSYPPNVRPL
401: SPYMPPPSGP VPPFHGPNPG MYEPPAVRPN SGPPPSYNAG YKQQGGGGFP EQYGYSGSPS HCGNAGMNSP SPFALTGASS AGSGKYGKLP TAQLLPQAAP
501: VSSTPSGSSG TRVAVDDVVD KVSTMGFSKE QVRATVRRLT ENGQNVDLNV VLDKLMNDTD AQPPQRGWFG R
101: SPKLKTAAMM EPRVLKKVSH EEERSNFNAV TIADIDRTMK KYADNLLHAL EGVSSRLAQL EGRTHHLEDS VGELKLTVGN YNGSTDGKLR QFENTLREVQ
201: AGVQILRDKQ EIVEAQVQLT KLQVSKAEDV ESENASAGQV DSRQQLTAPQ PTVQQQHQAY PPSQPTGLPA LPAPNAPPPP MVHNQPPPQF QGHLPHPQMQ
301: SVAPAPSGPT ISQESYYPPS TQTTEAAHQQ YQAPPASQPQ APPAAPQHYQ HLPQYAPYSQ PPLPGSANPQ SAAASLPQQP EEAAPYGPPA QSYPPNVRPL
401: SPYMPPPSGP VPPFHGPNPG MYEPPAVRPN SGPPPSYNAG YKQQGGGGFP EQYGYSGSPS HCGNAGMNSP SPFALTGASS AGSGKYGKLP TAQLLPQAAP
501: VSSTPSGSSG TRVAVDDVVD KVSTMGFSKE QVRATVRRLT ENGQNVDLNV VLDKLMNDTD AQPPQRGWFG R
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.