Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008708_P001 | Maize | extracellular | 83.98 | 84.72 |
| KXG31759 | Sorghum | nucleus | 84.68 | 81.8 |
| Os01t0169900-01 | Rice | plasma membrane | 75.18 | 73.62 |
| TraesCS3A01G092900.1 | Wheat | nucleus | 62.5 | 58.87 |
| TraesCS3B01G108100.1 | Wheat | nucleus | 62.15 | 58.54 |
| HORVU3Hr1G016420.3 | Barley | cytosol, nucleus | 61.27 | 58.49 |
| TraesCS3D01G093200.1 | Wheat | nucleus | 59.68 | 57.56 |
| GSMUA_Achr6P03180_001 | Banana | nucleus | 43.66 | 45.09 |
| GSMUA_Achr2P14190_001 | Banana | nucleus | 40.85 | 43.12 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 40.85 | 41.21 |
| KRH56551 | Soybean | nucleus | 39.79 | 39.44 |
| KRG93222 | Soybean | nucleus | 39.79 | 39.1 |
| Solyc02g086520.2.1 | Tomato | nucleus | 37.15 | 38.72 |
| CDX91045 | Canola | nucleus | 32.57 | 38.07 |
| CDX85594 | Canola | nucleus | 32.39 | 37.78 |
| AT3G01560.1 | Thale cress | nucleus | 33.45 | 37.18 |
| PGSC0003DMT400072130 | Potato | nucleus | 33.8 | 36.92 |
| PGSC0003DMT400032802 | Potato | nucleus | 34.86 | 36.46 |
| AT5G14540.1 | Thale cress | nucleus | 34.86 | 36.2 |
| Solyc12g035240.1.1 | Tomato | nucleus | 31.34 | 36.11 |
| Bra023474.1-P | Field mustard | nucleus | 33.8 | 35.82 |
| VIT_17s0000g08970.t01 | Wine grape | nucleus | 27.82 | 33.69 |
| Zm00001d012728_P001 | Maize | nucleus | 21.65 | 21.06 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 16.55 | 18.01 |
| Zm00001d038998_P001 | Maize | plastid | 15.67 | 16.98 |
| Zm00001d043906_P002 | Maize | nucleus | 14.79 | 15.3 |
| Zm00001d011562_P003 | Maize | plastid | 13.73 | 13.49 |
Protein Annotations
| EMBL:BT039259 | EnsemblPlants:Zm00001d039686_P001 | EnsemblPlants:Zm00001d039686_T001 | EnsemblPlantsGene:Zm00001d039686 | EntrezGene:100272723 | InterPro:DUF1421 |
| ncoils:Coil | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF12 | PFAM:PF07223 | ProteinID:ONM29713.1 | SEG:seg |
| UniParc:UPI00017B7B7A | UniProt:B4FQ71 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3:+:11849125..11853329
Molecular Weight (calculated)
59735.5 Da
IEP (calculated)
6.713
GRAVY (calculated)
-0.658
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MNASQFMDKQ ILGLAASASP SGGGAGGGGG VDLSDLMIPI PQEDGEDRLR RRRSSSSVNG TSDDMLPSYD FQPIRTGGAT AAAPVSQASW GSLDSKAPSA
101: SASASAAASY NLKSAGILEP HVLKKVSHEE DRSNFPTVTI ADIDRTMKKY SDNLLHALEG VSSRLSQMEG RTHQLENSVD ELKLTIGNYN GSTDGKLRHL
201: ENMLREVQAG VQILRDKQEI VEAQLHLAKL QTTKTDAHSS ENSGSGHAGS QPVPPPQAAI QPQQVLTPLQ PPALPALPAP NAPLPTLQSQ PPSQFPSHLQ
301: HSQVPSVPSV APVPSVPALP RDAYYAPSSQ PTETMHQQYQ APPVPQPQAP PAPQQYQSPS QFPQYSQPSQ PSNVNPPTPH VPPAPQQPEE TMPYPPPQSY
401: APNARPPSPY MQPPSGPAPP YYGQQNPTMY EPPAGRANPG PPSSYGSGGY GPQGGSGFSD SYGYAGSPSH RGNAGMKPST PFAQSSGGSG GYGSGRLPTA
501: QILPQAVPVS SSSTSGASGN RVPLDDVVEK VATMGFSREQ VRATVRRLTE NGQNVDLNVV LDKLMNGR
101: SASASAAASY NLKSAGILEP HVLKKVSHEE DRSNFPTVTI ADIDRTMKKY SDNLLHALEG VSSRLSQMEG RTHQLENSVD ELKLTIGNYN GSTDGKLRHL
201: ENMLREVQAG VQILRDKQEI VEAQLHLAKL QTTKTDAHSS ENSGSGHAGS QPVPPPQAAI QPQQVLTPLQ PPALPALPAP NAPLPTLQSQ PPSQFPSHLQ
301: HSQVPSVPSV APVPSVPALP RDAYYAPSSQ PTETMHQQYQ APPVPQPQAP PAPQQYQSPS QFPQYSQPSQ PSNVNPPTPH VPPAPQQPEE TMPYPPPQSY
401: APNARPPSPY MQPPSGPAPP YYGQQNPTMY EPPAGRANPG PPSSYGSGGY GPQGGSGFSD SYGYAGSPSH RGNAGMKPST PFAQSSGGSG GYGSGRLPTA
501: QILPQAVPVS SSSTSGASGN RVPLDDVVEK VATMGFSREQ VRATVRRLTE NGQNVDLNVV LDKLMNGR
001: MQSFDLIKSA LFSDKQIMDL MNDNSNNSQD GDHQNYRVGD NGLESKKEAI FPSYDFQPMR PNASAGLSHH ALDLAGSVNS TAARVWDASD PKPVSASSAR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
101: SYGSMDSLEP SKLFAEKDRN SPESAIISAI DRTMKAHADK LLHVMEGVSA RLTQLETRTR DLENLVDDVK VSVGNSHGKT DGKLRQLENI MLEVQNGVQL
201: LKDKQEIVEA QLQLSKLQLS KVNQQPETHS THVEPTAQPP ASLPQPPASA AAPPSLTQQG LPPQQFIQPP ASQHGLSPPS LQLPQLPNQF SPQQEPYFPP
301: SGQSQPPPTI QPPYQPPPPT QSLHQPPYQP PPQQPQYPQQ PPPQLQHPSG YNPEEPPYPQ QSYPPNPPRQ PPSHPPPGSA PSQQYYNAPP TPPSMYDGPG
401: GRSNSGFPSG YSPESYPYTG PPSQYGNTPS VKPTHQSGSG SGAYPQLPMA RPLPQGLPMA SAISSGGSGG GSDSPRSGNR APVDDVIDKV VSMGFPRDQV
501: RGTVRTLTEN GQAVDLNVVL DKLMNGDRGA MMQQQQQQPP RGWFGGR
Arabidopsis Description
AT5G14540 protein [Source:UniProtKB/TrEMBL;Acc:B9DHK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.